CGR6528, CGR6528 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCGR6528
Genbank IDGQ394095
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 33 B
Source SequenceMONCS1060
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1CGR6528_F: TGCAGAAGGCACTAAGAGCA
Primer 2CGR6528_R: GCAGAAGTGAAGAGACAAGCG
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ394095
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A03chromosomeA03:7020023..7020205 +
D03chromosomeD03:45906780..45906967 -
CM018204.1chromosomeCM018204.1:6872217..6872393 +
CM018217.1chromosomeCM018217.1:46195045..46195230 -
D5_02chromosomeD5_02:40037118..40037307 -
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:105844289..105844465 +
D10_02chromosomeD10_02:44376413..44376599 -
At_chr5chromosomeAt_chr5:4613485..4613667 +
Dt_chr3chromosomeDt_chr3:21116618..21116805 -
A03chromosomeA03:5865484..5865666 +
D03chromosomeD03:39947488..39947675 -
Ghir_A03chromosomeGhir_A03:7710767..7710949 +
Ghir_D03chromosomeGhir_D03:45691286..45691473 -
A03chromosomeA03:7262220..7262402 +
D03chromosomeD03:47188921..47189108 -
A03chromosomeA03:7662383..7662565 +
D03chromosomeD03:46688564..46688751 -
A03chromosomeA03:7078611..7078784 +
D03chromosomeD03:45996803..45996990 -
At03chromosomeAt03:5931623..5931799 +
scaffold8357supercontigscaffold8357:130659..130844 +
scaffold4033supercontigscaffold4033:220943..221119 +
Gbar_A03chromosomeGbar_A03:6746332..6746508 +
Gbar_D03chromosomeGbar_D03:44603818..44604003 -
A03chromosomeA03:7020221..7020397 +
D03chromosomeD03:47095986..47096171 -
CM017612.1chromosomeCM017612.1:7261575..7261751 +
CM017625.1chromosomeCM017625.1:45444012..45444197 -
CM017638.1chromosomeCM017638.1:7705790..7705966 +
CM017651.1chromosomeCM017651.1:49559086..49559271 -
CM017690.1chromosomeCM017690.1:7183473..7183649 +
CM017703.1chromosomeCM017703.1:47074192..47074377 -
A03chromosomeA03:7763479..7763661 +
D03chromosomeD03:47950356..47950543 -
Chr02chromosomeChr02:6759836..6760012 +
Chr01chromosomeChr01:111360350..111360526 -
Chr02chromosomeChr02:42132376..42132565 -
B_04chromosomeB_04:7635610..7635804 +
Chr03chromosomeChr03:43473504..43473686 -
Chr_03chromosomeChr_03:24620231..24620419 -
Chr03chromosomeChr03:21531696..21531881 -
Chr03chromosomeChr03:27058218..27058417 -
E02chromosomeE02:79175030..79175235 -
Germplasm
Stock NameType
Deltapine 33 Baccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS1060MONCS1060Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1GX1135 x GX100-2, F2 (2013)AD_ch03_At.03N/A39.9CGR6528View
2GX1135 x GX100-2, RIL (2016)AD_ch03_At.03N/A18.1CGR6528View
3CCRI-36 x G2005, RIL (2016)AD_ch03_At.03N/A123.8CGR6528View
4901-001 x sGK156, F2 (2019)AD_ch03_At.03N/A44.62CGR6528View
5Monsanto SSR Bin Map, (2009)AD_ch03_At.03N/A61CGR6528View
6DH962 X Ji Mian 5, F2 (2015)AD_ch07_At.07N/A31.52MON_CGR6528View
7DH962 x Ji Mian 5, RIL (2015)AD_ch07_At.07N/A7.5MON_CGR6528View
8TM-1 x Hai-7124, BC1 (2012)AD_ch03_At.03N/A70.4cgr6528-175View
Sequence
>CGR6528 ID=CGR6528; Name=CGR6528; organism=Gossypium hirsutum; type=genetic_marker; length=183bp
TGCAGAAGGCACTAAGAGCAAATACTGCTGTTGTGAGCATATAATTTGGA
CATACAGACTCCTCTACAAACGATGTTGAATTAGTTCAAGTAACGGACTA
CTGCTTCCTGCTGTCCTTCTTCTTCTTCTTCTTCTTCTTCCTTTCGTCTG
TTTAGCTTTCTTCGCTTGTCTCTTCACTTCTGC