CGR6410, CGR6410 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCGR6410
Genbank IDGQ394049
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 33 B
Source SequenceMONCS1014
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1CGR6410_F: GAGTTCGGACCTCAATCGAC
Primer 2CGR6410_R: AAGCCGTCATCCAACAACAG
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ394049
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D04chromosomeD04:6676834..6676983 +
A05chromosomeA05:92645733..92645864 -
CM018218.1chromosomeCM018218.1:6151627..6151761 +
CM018206.1chromosomeCM018206.1:95320704..95320835 -
KI_06chromosomeKI_06:47406514..47406650 +
Chr04_CRI-A2_v1.0.a1chromosomeChr04_CRI-A2_v1.0.a1:90806145..90806275 -
D10_04chromosomeD10_04:6075660..6075788 +
CM016617.1chromosomeCM016617.1:10248599..10248729 +
scaffold1041.1supercontigscaffold1041.1:169605..169754 +
At_chr9chromosomeAt_chr9:63205153..63205284 -
D04chromosomeD04:5956598..5956747 +
A05chromosomeA05:84391811..84391942 -
Ghir_D04chromosomeGhir_D04:6611668..6611817 +
Ghir_A05chromosomeGhir_A05:101607143..101607274 -
D04chromosomeD04:6515406..6515555 +
A05chromosomeA05:102965743..102965874 -
D04chromosomeD04:6485043..6485194 +
A05chromosomeA05:101587520..101587651 -
D04chromosomeD04:5936484..5936621 +
A05chromosomeA05:99602776..99602907 -
Dt04chromosomeDt04:6356696..6356830 +
scaffold9562supercontigscaffold9562:24909..25043 +
scaffold10176supercontigscaffold10176:13949..14080 +
Gbar_D04chromosomeGbar_D04:6141849..6141983 +
Gbar_A05chromosomeGbar_A05:95341732..95341863 -
D04chromosomeD04:6105042..6105176 +
A05chromosomeA05:100379707..100379838 -
CM017626.1chromosomeCM017626.1:6223058..6223194 +
CM017614.1chromosomeCM017614.1:97296555..97296686 -
CM017652.1chromosomeCM017652.1:6443173..6443310 +
CM017640.1chromosomeCM017640.1:105772482..105772613 -
CM017704.1chromosomeCM017704.1:6406864..6406998 +
CM017692.1chromosomeCM017692.1:98220330..98220461 -
D04chromosomeD04:6964312..6964461 +
A05chromosomeA05:103180009..103180140 -
Chr04chromosomeChr04:8225120..8225252 +
Chr04chromosomeChr04:8173269..8173399 +
Chr04chromosomeChr04:44523733..44523861 -
B_02chromosomeB_02:76965519..76965651 -
Chr12chromosomeChr12:6469657..6469788 +
chr12chromosomechr12:5997041..5997169 +
Chr_12chromosomeChr_12:4539097..4539225 +
Chr12chromosomeChr12:6226043..6226171 +
Chr12chromosomeChr12:6162306..6162434 +
Chr12chromosomeChr12:4187428..4187556 +
Chr12chromosomeChr12:5911894..5912025 +
F04chromosomeF04:6667559..6667689 +
Chr04chromosomeChr04:10210539..10210670 +
Germplasm
Stock NameType
Deltapine 33 Baccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS1014MONCS1014Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch22_Dt.04N/A31.9CGR6410View
2Yumian-1 x 7235, RIL (2015)AD_ch22_Dt.04N/A34CGR6410View
3W10 x TM-1, F2:3 (2015)AD_ch22_Dt.04N/A80CGR6410View
4GX1135 x VGX100-2, RIL (2016)AD_ch22_Dt.04N/A3.7CGR6410View
5CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch22_Dt.04N/A101.4CGR6410View
6CCRI-35 x Yumian-1, RIL (2015)AD_ch22_Dt.04N/A71.8CGR6410View
7Monsanto SSR Bin Map, (2009)AD_ch22_Dt.04N/A61CGR6410View
8(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch22_Dt.04N/A21.9MON_CGR6410View
9DH962 X Ji Mian 5, F2 (2015)AD_ch22_Dt.04N/A63.29MON_CGR6410View
10DH962 x Ji Mian 5, RIL (2015)AD_ch22_Dt.04N/A16.8MON_CGR6410View
11CCRI-35 x Yumian-1, RIL (2017)AD_ch22_Dt.04N/A40.85CGR6410View
12TM-1 x Hai-7124, BC1 (2012)AD_ch22_Dt.04N/A87.6cgr6410-300View
Sequence
>CGR6410 ID=CGR6410; Name=CGR6410; organism=Gossypium hirsutum; type=genetic_marker; length=138bp
GAGTTCGGACCTCAATCGACTATTCTCTTCTTCCTGAGAATAGATGCAAA
AAAATTACTCTTTTTTTATCATCACAACTAAAGATGGAGGAGAAGAAGAA
GAAGAAGAAGAAGAAAACCTGTTGTTGGATGACGGCTT