CGR6388, CGR6388 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCGR6388
Genbank IDGQ394042
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 33 B
Source SequenceMONCS1007
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1CGR6388_F: CAGAGTAACTGCAAGTGCCC
Primer 2CGR6388_R: CCACCACACTCCACTACACG
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ394042
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D12chromosomeD12:12391898..12392081 -
A12chromosomeA12:16897014..16897188 -
CM018226.1chromosomeCM018226.1:12047569..12047745 -
CM018213.1chromosomeCM018213.1:16150524..16150697 -
D5_12chromosomeD5_12:45534496..45534674 +
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:89899862..89900036 +
D10_12chromosomeD10_12:8963827..8964014 -
CM016625.1chromosomeCM016625.1:37532965..37533154 -
Dt_chr8chromosomeDt_chr8:17599788..17599971 +
At_chr8chromosomeAt_chr8:33594373..33594547 +
D12chromosomeD12:12436740..12436923 -
A12chromosomeA12:16275603..16275777 -
Ghir_D12chromosomeGhir_D12:12324366..12324549 -
Ghir_A12chromosomeGhir_A12:16538732..16538906 -
D12chromosomeD12:12069576..12069759 -
A12chromosomeA12:15916439..15916613 -
D12chromosomeD12:12363905..12364088 -
A12chromosomeA12:16507834..16508008 -
D12chromosomeD12:12278974..12279157 -
A12chromosomeA12:16510308..16510482 -
scaffold30149supercontigscaffold30149:11220..11396 +
scaffold30149supercontigscaffold30149:7383..7559 +
scaffold1112supercontigscaffold1112:509831..510004 +
Gbar_D12chromosomeGbar_D12:12074090..12074266 -
Gbar_A12chromosomeGbar_A12:16395679..16395852 -
D12chromosomeD12:11906400..11906576 -
A12chromosomeA12:16017906..16018079 -
CM017634.1chromosomeCM017634.1:12100666..12100840 -
CM017621.1chromosomeCM017621.1:16084213..16084387 -
CM017660.1chromosomeCM017660.1:12283514..12283697 -
CM017647.1chromosomeCM017647.1:16651159..16651332 -
CM017712.1chromosomeCM017712.1:12085930..12086104 -
CM017699.1chromosomeCM017699.1:16060979..16061152 -
D12chromosomeD12:12563294..12563477 -
A12chromosomeA12:16624221..16624395 -
Chr12chromosomeChr12:76552598..76552772 +
Chr12chromosomeChr12:16740405..16740579 -
Chr12chromosomeChr12:11992576..11992754 -
B_12chromosomeB_12:17017870..17018044 -
Chr08chromosomeChr08:12161807..12161985 -
chr08chromosomechr08:10964380..10964568 -
Chr_08chromosomeChr_08:10836798..10837087 -
Chr08chromosomeChr08:12373859..12374041 -
Chr08chromosomeChr08:10255531..10255701 -
Chr08chromosomeChr08:7701155..7701319 -
Chr08chromosomeChr08:9527309..9527479 -
E12chromosomeE12:19343736..19343908 -
F12chromosomeF12:14539322..14539496 -
Chr12chromosomeChr12:126853550..126853726 +
Germplasm
Stock NameType
Deltapine 33 Baccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS1007MONCS1007Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch26_Dt.12N/A24.8CGR6388View
2CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch26_Dt.12N/A117.3CGR6388View
3CCRI-36 x G2005, RIL (2016)AD_ch23_Dt.09N/A8.3CGR6388View
4Monsanto SSR Bin Map, (2009)AD_ch26_Dt.12N/A81CGR6388View
5(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch12_At.12N/A90.2MON_CGR6388View
Sequence
>CGR6388 ID=CGR6388; Name=CGR6388; organism=Gossypium hirsutum; type=genetic_marker; length=180bp
CAGAGTAACTGCAAGTGCCCCCCACAAAACTCAACTGCAAAAGGAAGATC
AAGAAATGAAATTCAAGTCCTACCTTCTTTTCTTTCCTCTCTCTCTCTCT
CTCTCTCTCTCATTGTCATGTTTTTCAACAAGAAAAGCAAAAAAAGCTAA
GTGTTATTGACGTGTAGTGGAGTGTGGTGG