CGR6149, CGR6149 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCGR6149
Genbank IDGQ393986
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 33 B
Source SequenceMONCS0951
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1CGR6149_F: CACCATACCGAGCTACTCCAG
Primer 2CGR6149_R: ATCGTTCCAAGCAAACCAAC
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ393986
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D12chromosomeD12:55224577..55224721 -
A12chromosomeA12:93775145..93775287 -
CM018226.1chromosomeCM018226.1:51951936..51952071 -
CM018213.1chromosomeCM018213.1:90683681..90683823 -
D5_12chromosomeD5_12:7904477..7904606 +
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:9356211..9356356 +
D10_12chromosomeD10_12:46869063..46869211 -
CM016625.1chromosomeCM016625.1:12102692..12102822 +
scaffold2376.1supercontigscaffold2376.1:181734..181869 +
Dt_chr7chromosomeDt_chr7:34613173..34613317 -
scaffold4591_D12supercontigscaffold4591_D12:38830..38974 +
A12chromosomeA12:79241700..79241842 -
Ghir_A11chromosomeGhir_A11:97142022..97142151 +
Ghir_D12chromosomeGhir_D12:54472459..54472603 -
Ghir_A12chromosomeGhir_A12:98455608..98455750 -
Ghir_A03chromosomeGhir_A03:103449201..103449340 -
D12chromosomeD12:53275568..53275712 -
A12chromosomeA12:98836994..98837136 -
D12chromosomeD12:54103925..54104069 -
A12chromosomeA12:96613007..96613149 -
D12chromosomeD12:52325672..52325816 -
A12chromosomeA12:93512716..93512858 -
At11chromosomeAt11:73302700..73302829 +
At12chromosomeAt12:84836482..84836624 -
At03chromosomeAt03:93124682..93124817 -
scaffold3363supercontigscaffold3363:686342..686471 +
scaffold5741supercontigscaffold5741:171868..172003 -
scaffold10470supercontigscaffold10470:77417..77559 -
Gbar_A11chromosomeGbar_A11:86842721..86842850 +
Gbar_D12chromosomeGbar_D12:51273662..51273797 -
Gbar_A12chromosomeGbar_A12:93393433..93393575 -
Gbar_A03chromosomeGbar_A03:95994374..95994509 -
D12chromosomeD12:52398857..52398992 -
A12chromosomeA12:92685508..92685650 -
CM017634.1chromosomeCM017634.1:52447285..52447432 -
CM017621.1chromosomeCM017621.1:93930049..93930185 -
CM017660.1chromosomeCM017660.1:55281563..55281710 -
CM017647.1chromosomeCM017647.1:97434578..97434720 -
CM017638.1chromosomeCM017638.1:104772265..104772409 -
CM017712.1chromosomeCM017712.1:53055225..53055360 -
CM017699.1chromosomeCM017699.1:93020784..93020926 -
D12chromosomeD12:54534771..54534915 -
A12chromosomeA12:100140468..100140610 -
Chr03chromosomeChr03:9539085..9539230 +
Chr12chromosomeChr12:100823421..100823563 -
Chr12chromosomeChr12:107971918..107972063 -
Chr12chromosomeChr12:49879144..49879273 -
Chr08chromosomeChr08:50176857..50177023 -
chr08chromosomechr08:38799156..38799702 -
Chr_08chromosomeChr_08:36749541..36749689 -
Chr08chromosomeChr08:51614208..51614367 -
Chr08chromosomeChr08:35593525..35593658 -
Chr08chromosomeChr08:27983346..27983491 -
Chr08chromosomeChr08:34333022..34333155 -
F12chromosomeF12:82988960..82989108 -
Chr12chromosomeChr12:159267671..159267801 -
Chr08chromosomeCGR6149:1..463 .
Chr08:49296385..49296832 -
Chr8chromosomeCGR6149:1..463 .
Chr8:14582558..14583005 +
Germplasm
Stock NameType
Deltapine 33 Baccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS0951MONCS0951Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch12_At.12N/A74.4CGR6149View
2Yumian-1 x 7235, RIL (2015)AD_ch12_At.12N/A129.3CGR6149View
3CCRI-35 x Yumian-1, RIL (2015)AD_ch12_At.12N/A51.8CGR6149View
4Monsanto SSR Bin Map, (2009)AD_ch26_Dt.12N/A41CGR6149View
5(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch12_At.12N/A38.5MON_CGR6149View
6CCRI-35 x Yumian-1, RIL (2017)AD_ch12_At.12N/A96.31CGR6149View
7MGG-293-793, MAGIC (2018)AD_ch26_Dt.12N/A98.4CGR6149View
Sequence
>CGR6149 ID=CGR6149; Name=CGR6149; organism=Gossypium hirsutum; type=genetic_marker; length=145bp
CACCATACCGAGCTACTCCAGTAAGTTCCTCCTTTCTAATTGATTAATCA
ATATTCCCCTTCTCCAAAACCCTGACGAAAAATCTCATTTCTTCTTCTTC
TTCTTCTTCTTCTTCTTCTTCTTAGGTTGGTTTGCTTGGAACGAT