CGR6144, CGR6144 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCGR6144
Genbank IDGQ393981
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 33 B
Source SequenceMONCS0946
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1CGR6144_F: GGACCGTTTCCCATTTAGGT
Primer 2CGR6144_R: AGACACCAGCATCCACATCA
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ393981
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D01chromosomeD01:56985773..56985912 +
CM018215.1chromosomeCM018215.1:55703146..55703275 +
D5_01chromosomeD5_01:50070473..50070598 +
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:89771704..89771832 +
D10_01chromosomeD10_01:6885005..6885147 -
Dt_chr2chromosomeDt_chr2:10797958..10798087 -
D01chromosomeD01:54259935..54260074 +
Ghir_D01chromosomeGhir_D01:55938664..55938802 +
Ghir_A01chromosomeGhir_A01:108368866..108368992 +
D01chromosomeD01:57634563..57634702 +
D01chromosomeD01:57348886..57349015 +
D01chromosomeD01:54588254..54588393 +
scaffold2675supercontigscaffold2675:628681..628810 -
scaffold2675supercontigscaffold2675:631528..631654 -
scaffold1117supercontigscaffold1117:69901..70030 -
Gbar_D01chromosomeGbar_D01:55928806..55928935 +
Gbar_A01chromosomeGbar_A01:106464366..106464492 +
D01chromosomeD01:56623414..56623543 +
CM017623.1chromosomeCM017623.1:56739982..56740115 +
CM017610.1chromosomeCM017610.1:105060717..105060843 +
CM017649.1chromosomeCM017649.1:58200460..58200587 +
CM017636.1chromosomeCM017636.1:112338873..112338999 +
CM017701.1chromosomeCM017701.1:56246410..56246545 +
CM017688.1chromosomeCM017688.1:102606538..102606664 +
D01chromosomeD01:57832130..57832269 +
Chr01chromosomeChr01:113476536..113476662 +
Chr02chromosomeChr02:9594517..9594645 -
Chr01chromosomeChr01:45459778..45459903 +
Chr02chromosomeChr02:54181871..54182009 +
Chr02chromosomeChr02:55038684..55038820 +
Chr02chromosomeChr02:39919156..39919294 +
Chr02chromosomeChr02:31515494..31515622 +
Chr02chromosomeChr02:38309121..38309259 +
E01chromosomeE01:106827790..106827914 +
F01chromosomeF01:90798358..90798482 +
Chr01chromosomeChr01:16315988..16316112 -
Germplasm
Stock NameType
Deltapine 33 Baccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS0946MONCS0946Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch15_Dt.01N/A89.8CGR6144View
2W10 x TM-1, F2:3 (2015)AD_ch15_Dt.01N/A65CGR6144View
30-153 x sGK9708, RIL (2016)AD_ch15_Dt.01N/A42.1CGR6144View
4CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch15_Dt.01N/A64.2CGR6144View
5Monsanto SSR Bin Map, (2009)AD_ch15_Dt.01N/A21CGR6144View
Sequence
>CGR6144 ID=CGR6144; Name=CGR6144; organism=Gossypium hirsutum; type=genetic_marker; length=134bp
GGACCGTTTCCCATTTAGGTATGACTATAGGATGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTAATCTTTTCAAGTCAATTGATTGATCTTGTTGATGGT
TAAATCATGCAGCATGATGTGGATGCTGGTGTCT