CGR6129, CGR6129 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCGR6129
Genbank IDGQ393966
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 33 B
Source SequenceMONCS0931
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1CGR6129_F: TTCCTTCACCAACGCTTCTT
Primer 2CGR6129_R: CGAGAGTTCTTGAGGGATCG
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ393966
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D01chromosomeD01:1644875..1645012 +
A01chromosomeA01:2162737..2162868 +
CM018215.1chromosomeCM018215.1:1585279..1585413 +
CM018202.1chromosomeCM018202.1:1651601..1651732 +
D5_01chromosomeD5_01:1467210..1467344 +
KI_01chromosomeKI_01:1584746..1584877 +
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:1652177..1652308 +
D10_01chromosomeD10_01:58990799..58990936 -
CM016614.1chromosomeCM016614.1:2245200..2245331 +
scaffold2140.1supercontigscaffold2140.1:105529..105660 +
scaffold783.1supercontigscaffold783.1:489732..489869 -
D01chromosomeD01:1568788..1568925 +
A01chromosomeA01:1351269..1351400 +
Ghir_D01chromosomeGhir_D01:1619510..1619647 +
Ghir_A01chromosomeGhir_A01:1893986..1894117 +
D01chromosomeD01:1570483..1570620 +
A01chromosomeA01:1842504..1842635 +
D01chromosomeD01:1597558..1597695 +
A01chromosomeA01:1913811..1913942 +
D01chromosomeD01:1410228..1410365 +
A01chromosomeA01:1879215..1879346 +
Dt01chromosomeDt01:1842425..1842559 +
scaffold13138supercontigscaffold13138:134179..134313 +
scaffold15070supercontigscaffold15070:155741..155872 -
Gbar_D01chromosomeGbar_D01:1680180..1680314 +
Gbar_A01chromosomeGbar_A01:1646482..1646613 +
D01chromosomeD01:1612790..1612924 +
A01chromosomeA01:1642908..1643039 +
CM017623.1chromosomeCM017623.1:1712999..1713133 +
CM017610.1chromosomeCM017610.1:1880681..1880812 +
CM017649.1chromosomeCM017649.1:1535888..1536022 +
CM017636.1chromosomeCM017636.1:1695027..1695158 +
CM017701.1chromosomeCM017701.1:1809656..1809790 +
CM017688.1chromosomeCM017688.1:1689281..1689412 +
D01chromosomeD01:1592431..1592568 +
A01chromosomeA01:1912311..1912442 +
Chr01chromosomeChr01:1655165..1655296 +
Chr01chromosomeChr01:1585188..1585319 +
Chr01chromosomeChr01:1444616..1444750 +
B_01chromosomeB_01:1713717..1713848 +
Chr02chromosomeChr02:1643526..1643666 +
Chr_02chromosomeChr_02:1639505..1639642 +
Chr02chromosomeChr02:1755572..1755706 +
Chr02chromosomeChr02:1274814..1275047 +
Chr02chromosomeChr02:1216073..1216204 +
Chr02_4140494chromosomeChr02_4140494:6332..6466 +
E01chromosomeE01:1854003..1854134 +
F01chromosomeF01:1451919..1452053 +
Chr01chromosomeChr01:198296275..198296406 -
Chr02chromosomeCGR6129:2..575 .
Chr02:1443968..1444538 +
Chr8chromosomeCGR6129:2..575 .
Chr8:21059629..21060199 -
Germplasm
Stock NameType
Deltapine 33 Baccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS0931MONCS0931Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1GX1135 x GX100-2, F2 (2013)AD_ch08_At.08N/A44CGR6129View
2GX1135 x GX100-2, RIL (2016)AD_ch01_At.01N/A24.9CGR6129View
3GX1135 x VGX100-2, RIL (2016)AD_ch01_At.01N/A132.6CGR6129View
4CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch15_Dt.01N/A147.6CGR6129View
5Monsanto SSR Bin Map, (2009)AD_ch15_Dt.01N/A121CGR6129View
6LMY22 x LY343, RIL (2016)chr.15N/A0CGR6129View
7LMY22 x LY343, RIL (2020)A01N/A149.74CGR6129View
8DH962 X Ji Mian 5, F2 (2015)AD_ch01_At.01N/A109.98MON_CGR6129View
9DH962 X Ji Mian 5, F2 (2015)AD_ch15_Dt.01N/A109.98MON_CGR6129View
10DH962 x Ji Mian 5, RIL (2015)AD_ch11_At.11N/A46.6MON_CGR6129View
110-153 x sGK9708, RIL (2016)AD_ch15_Dt.01N/A11.8CGR6129aView
120-153 x sGK9708, RIL (2016)AD_ch15_Dt.01N/A12.9CGR6129bView
13CCRI-35 x Yumian-1, RIL (2017)AD_ch15_Dt.01N/A9.23CGR6129View
14TM-1 x Hai-7124, BC1 (2012)AD_ch15_Dt.01N/A109.6cgr6129-160View
Sequence
>CGR6129 ID=CGR6129; Name=CGR6129; organism=Gossypium hirsutum; type=genetic_marker; length=138bp
TTCCTTCACCAACGCTTCTTCCGTTCATTCCTCCGACGATCCTGACCCTA
ACCCTATAAACTCCAAATTCAAATCCAGTTTCCCTTCCCTTTCCTCTTCT
TCTTCTTCTTCTTCTTCCCGATCCCTCAAGAACTCTCG