CGR6012, CGR6012 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCGR6012
Genbank IDGQ393865
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 33 B
Source SequenceMONCS0830
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1CGR6012_F: ATGTGCCTTGTCCTCTTCCA
Primer 2CGR6012_R: GGGATGTGAGGGCATCATAG
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ393865
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D12chromosomeD12:47493483..47493622 +
A12chromosomeA12:82554618..82554753 +
A12chromosomeA12:82516336..82516472 +
CM018226.1chromosomeCM018226.1:44187373..44187520 +
CM018213.1chromosomeCM018213.1:79485266..79485401 +
D5_12chromosomeD5_12:15424653..15424797 -
KI_12chromosomeKI_12:10539500..10539643 -
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:20546589..20546721 -
D10_12chromosomeD10_12:39160485..39160628 +
CM016625.1chromosomeCM016625.1:112274340..112274474 -
scaffold1830.1supercontigscaffold1830.1:23842..23978 +
Dt_chr8chromosomeDt_chr8:40942359..40942498 +
D12chromosomeD12:43663423..43663562 +
A12chromosomeA12:68759735..68759871 +
Ghir_D12chromosomeGhir_D12:46682369..46682508 +
Ghir_A12chromosomeGhir_A12:87211432..87211568 +
D12chromosomeD12:45761284..45761423 +
A12chromosomeA12:88109347..88109483 +
D12chromosomeD12:46656009..46656146 +
A12chromosomeA12:85307773..85307909 +
D12chromosomeD12:44509751..44509898 +
A12chromosomeA12:82455217..82455353 +
Dt12chromosomeDt12:45810543..45810690 +
At12chromosomeAt12:72547866..72548001 +
scaffold354supercontigscaffold354:18386..18521 +
scaffold3102supercontigscaffold3102:421643..421790 +
Gbar_D12chromosomeGbar_D12:43475233..43475380 +
Gbar_A12chromosomeGbar_A12:81907625..81907760 +
D12chromosomeD12:44691095..44691236 +
A12chromosomeA12:81423953..81424088 +
CM017634.1chromosomeCM017634.1:44660502..44660647 +
CM017621.1chromosomeCM017621.1:82958378..82958513 +
CM017660.1chromosomeCM017660.1:47175180..47175323 +
CM017647.1chromosomeCM017647.1:86073886..86074021 +
CM017712.1chromosomeCM017712.1:45284970..45285117 +
CM017699.1chromosomeCM017699.1:81884821..81884956 +
D12chromosomeD12:46650476..46650615 +
A12chromosomeA12:88677493..88677629 +
Chr12chromosomeChr12:88607858..88607995 +
Chr12chromosomeChr12:95853433..95853565 +
Chr12chromosomeChr12:42366225..42366372 +
B_12chromosomeB_12:69082338..69082474 +
Chr08chromosomeChr08:42643534..42643675 +
Chr08chromosomeChr08:43782636..43782782 +
Chr08chromosomeChr08:23578465..23578604 +
E12chromosomeE12:92586918..92587050 +
F12chromosomeF12:73213564..73213698 +
Chr12chromosomeChr12:20688789..20688923 -
Germplasm
Stock NameType
Deltapine 33 Baccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS0830MONCS0830Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Baimian 1 x TM-1 , F2:3 (2014)AD_ch26_Dt.12N/A9.8CGR6012View
2CCRI-35 x Yumian-1, RIL (2015)AD_ch26_Dt.12N/A89CGR6012View
3LMY28 x XLZ24, RIL (2018)AD_ch26_Dt.12N/A16.25CGR6012View
4Monsanto SSR Bin Map, (2009)AD_ch12_At.12N/A41CGR6012View
5(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch12_At.12N/A39.4MON_CGR6012View
6DH962 X Ji Mian 5, F2 (2015)AD_ch26_Dt.12N/A65.93MON_CGR6012View
7DH962 x Ji Mian 5, RIL (2015)AD_ch26_Dt.12N/A48.8MON_CGR6012View
8CCRI-35 x Yumian-1, RIL (2017)AD_ch26_Dt.12N/A82.23CGR6012View
Sequence
>CGR6012 ID=CGR6012; Name=CGR6012; organism=Gossypium hirsutum; type=genetic_marker; length=146bp
ATGTGCCTTGTCCTCTTCCAGGACACACACACACACACACACACACAAAT
CCCTTTATTAATGAAAACACCGTGAGACCCTCGACGCACGCGCTGCGACA
ACAACGGACAAAGCCCACTTTATTTACTATGATGCCCTCACATCCC