CGR5853, CGR5853 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCGR5853
Genbank IDGQ393797
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 33 B
Source SequenceMONCS0762
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1CGR5853_F: CCCAAACCACATTCATTTCG
Primer 2CGR5853_R: TTCCCTCTCTCTCTCCCTCTC
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ393797
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A01chromosomeA01:16695065..16695194 +
A01chromosomeA01:15436157..15436286 +
Ghir_A01chromosomeGhir_A01:15956312..15956441 +
A01chromosomeA01:15856044..15856173 +
A01chromosomeA01:15880848..15880977 +
Germplasm
Stock NameType
Deltapine 33 Baccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS0762MONCS0762Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Monsanto SSR Bin Map, (2009)AD_ch01_At.01N/A101CGR5853View
2LMY22 x LY343, RIL (2020)A01N/A42.72CGR5853View
3DH962 X Ji Mian 5, F2 (2015)AD_ch01_At.01N/A76.38MON_CGR5853View
4DH962 X Ji Mian 5, F2 (2015)AD_ch15_Dt.01N/A76.38MON_CGR5853View
5DH962 x Ji Mian 5, RIL (2015)AD_ch01_At.01N/A42.2MON_CGR5853View
6DH962 x Ji Mian 5, RIL (2015)AD_ch15_Dt.01N/A42.2MON_CGR5853View
Sequence
>CGR5853 ID=CGR5853; Name=CGR5853; organism=Gossypium hirsutum; type=genetic_marker; length=134bp
CCCAAACCACATTCATTTCGATAAACATACTTCATGAAACTGTACAAAAC
CATGCAAATTGCAATGCAGAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGGGAGAGAGAGGGAGAGAGAGAGGGAA