CGR5653, CGR5653 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCGR5653
Genbank IDGQ393637
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 33 B
Source SequenceMONCS0602
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1CGR5653_F: AGATGAAAGGGTTGGTGACG
Primer 2CGR5653_R: CCTAGCTGCTCTTCATTGCC
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ393637
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D08chromosomeD08:64476544..64476669 +
A08chromosomeA08:118584242..118584361 +
CM018222.1chromosomeCM018222.1:60692213..60692332 +
CM018209.1chromosomeCM018209.1:113593710..113593829 +
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:123614382..123614501 +
At_chr1chromosomeAt_chr1:51807214..51807333 +
scaffold862.1supercontigscaffold862.1:212448..212573 -
D08chromosomeD08:61271435..61271560 +
A08chromosomeA08:98676756..98676875 +
Ghir_D08chromosomeGhir_D08:63674489..63674614 +
Ghir_A08chromosomeGhir_A08:117099721..117099840 +
D08chromosomeD08:64095998..64096123 +
A08chromosomeA08:119758112..119758231 +
D08chromosomeD08:63510285..63510407 +
A08chromosomeA08:119936001..119936120 +
A08chromosomeA08:115687368..115687487 +
Dt08chromosomeDt08:63578976..63579095 +
Dt08chromosomeDt08:63583684..63583803 +
scaffold14868supercontigscaffold14868:87935..88054 +
scaffold14868supercontigscaffold14868:92643..92762 +
scaffold5413supercontigscaffold5413:425530..425649 -
Gbar_D08chromosomeGbar_D08:60810943..60811062 +
Gbar_A08chromosomeGbar_A08:114225662..114225781 +
D08chromosomeD08:62668405..62668524 +
A08chromosomeA08:115257958..115258077 +
CM017630.1chromosomeCM017630.1:62408363..62408482 +
CM017617.1chromosomeCM017617.1:113848465..113848584 +
CM017656.1chromosomeCM017656.1:64588604..64588723 +
CM017643.1chromosomeCM017643.1:123335563..123335682 +
CM017708.1chromosomeCM017708.1:61099879..61099998 +
CM017695.1chromosomeCM017695.1:114458064..114458183 +
D08chromosomeD08:64296563..64296688 +
A08chromosomeA08:121801346..121801465 +
Chr08chromosomeChr08:126096714..126096833 +
Chr08chromosomeChr08:127065422..127065541 +
B_08chromosomeB_08:98788826..98788942 +
Chr04chromosomeChr04:61634419..61634544 +
E08chromosomeE08:116075448..116075567 +
F08chromosomeF08:99962449..99962568 +
Germplasm
Stock NameType
Deltapine 33 Baccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS0602MONCS0602Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1W10 x TM-1, F2:3 (2015)AD_ch24_Dt.08N/A21CGR5653View
2CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch24_Dt.08N/A107.8CGR5653View
3Monsanto SSR Bin Map, (2009)AD_ch24_Dt.08N/A21CGR5653View
Sequence
>CGR5653 ID=CGR5653; Name=CGR5653; organism=Gossypium hirsutum; type=genetic_marker; length=120bp
AGATGAAAGGGTTGGTGACGATGAAGATGTTGTGGAAGAGGTGGTAGTTA
GTTCGGATGAAGATGAAGATGAAGATGAAGAAGATACTGCCGAGGAAGAT
GGCAATGAAGAGCAGCTAGG