CGR5651, CGR5651 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCGR5651
Genbank IDGQ393635
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 33 B
Source SequenceMONCS0600
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1CGR5651_F: TTTGGCTTAGCATTTGGAGG
Primer 2CGR5651_R: CCGATCACTGTCCGTCTCTT
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ393635
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D06chromosomeD06:2642687..2642828 +
A06chromosomeA06:3056006..3056152 +
CM018220.1chromosomeCM018220.1:2483725..2483866 +
CM018207.1chromosomeCM018207.1:2867694..2867835 +
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:2589077..2589219 +
D10_06chromosomeD10_06:57555935..57556076 -
CM016619.1chromosomeCM016619.1:142598268..142598409 -
scaffold445.1supercontigscaffold445.1:744088..744234 +
scaffold2101.1supercontigscaffold2101.1:34935..35076 -
D06chromosomeD06:2208688..2208829 +
scaffold1255_A06supercontigscaffold1255_A06:11877..12023 -
Ghir_D06chromosomeGhir_D06:2622547..2622688 +
Ghir_A06chromosomeGhir_A06:2950657..2950803 +
D06chromosomeD06:2480038..2480179 +
A06chromosomeA06:2786602..2786748 +
D06chromosomeD06:2623495..2623636 +
A06chromosomeA06:2866195..2866341 +
D06chromosomeD06:2742947..2743088 +
A06chromosomeA06:2825970..2826116 +
Dt06chromosomeDt06:2245723..2245864 +
scaffold48093supercontigscaffold48093:28568..28709 +
scaffold11800supercontigscaffold11800:224451..224592 +
Gbar_D06chromosomeGbar_D06:2569672..2569813 +
Gbar_A06chromosomeGbar_A06:2759300..2759441 +
A06chromosomeA06:2823695..2823836 +
CM017628.1chromosomeCM017628.1:2698961..2699102 +
CM017615.1chromosomeCM017615.1:2788596..2788737 +
CM017654.1chromosomeCM017654.1:2695794..2695935 +
CM017641.1chromosomeCM017641.1:2993229..2993370 +
CM017706.1chromosomeCM017706.1:2591568..2591709 +
CM017693.1chromosomeCM017693.1:2899640..2899781 +
D06chromosomeD06:2679181..2679322 +
A06chromosomeA06:2932752..2932898 +
Chr06chromosomeChr06:2885514..2885655 +
Chr06chromosomeChr06:2882072..2882214 +
B_06chromosomeB_06:94631990..94632131 -
Chr10chromosomeChr10:2577865..2578006 +
chr10chromosomechr10:2588716..2588857 +
Chr10chromosomeChr10:2553133..2553274 +
Chr10chromosomeChr10:1987780..1987916 +
Chr10chromosomeChr10:1843191..1843332 +
Chr10chromosomeChr10:2277619..2277755 +
E06chromosomeE06:114954262..114954403 -
F06chromosomeF06:2236818..2236959 +
Chr06chromosomeChr06:200060438..200060579 -
Germplasm
Stock NameType
Deltapine 33 Baccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS0600MONCS0600Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
10-153 x sGK9708, RIL (2016)AD_ch06_At.06N/A0CGR5651View
2LMY28 x XLZ24, RIL (2018)AD_ch06_At.06N/A7.1CGR5651View
3Monsanto SSR Bin Map, (2009)AD_ch06_At.06N/A101CGR5651View
Sequence
>CGR5651 ID=CGR5651; Name=CGR5651; organism=Gossypium hirsutum; type=genetic_marker; length=147bp
TTTGGCTTAGCATTTGGAGGAGGAGAGGAGAGGAGAGGAGAATATGAGAA
AATTGGCGGATCCTTACGTGTTGGCGTGGATCTCGGTTTTCGTAACCACG
CTTCTTGCTTTGTGCGGTGTCGTTTTGAAGAGACGGACAGTGATCGG