CGR5542, CGR5542 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCGR5542
Genbank IDGQ393546
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 33 B
Source SequenceMONCS0511
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1CGR5542_F: TTGCTGCAGTGGATGTTAGC
Primer 2CGR5542_R: CTTCCACGAAGGCAACTGT
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ393546
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ghir_D08chromosomeGhir_D08:55897839..55897956 +
Gbar_D08chromosomeGbar_D08:53167601..53167718 +
Chr04chromosomeChr04:34034161..34034386 +
F08chromosomeF08:91082430..91082559 +
Germplasm
Stock NameType
Deltapine 33 Baccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS0511MONCS0511Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch08_At.08N/A4.3MON_CGR5542View
2DH962 X Ji Mian 5, F2 (2015)AD_ch08_At.08N/A30.75MON_CGR5542View
3DH962 x Ji Mian 5, RIL (2015)AD_ch08_At.08N/A51.1MON_CGR5542View
4CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch08_At.08N/A38.4CGR5542View
5CCRI-35 x Yumian-1, RIL (2015)AD_ch08_At.08N/A25CGR5542View
6CCRI-35 x Yumian-1, RIL (2017)AD_ch08_At.08N/A75.92CGR5542View
Sequence
>CGR5542 ID=CGR5542; Name=CGR5542; organism=Gossypium hirsutum; type=genetic_marker; length=144bp
TTGCTGCAGTGGATGTTAGCTTTGGTTTACCCCCGGATTCCAAGGGGGTG
AATGAAAGAAATTTTGTTTTGGCAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGCATTTCCCGTTGTAAAATGNACAGTTGCCTTCGTGGAAG