CGR5520, CGR5520 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCGR5520
Genbank IDGQ393528
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 33 B
Source SequenceMONCS0493
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1CGR5520_F: ACGGGAAGTTGAGTCTGAGG
Primer 2CGR5520_R: CATGCGCCTTGCTAAAGAA
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ393528
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D07chromosomeD07:53042281..53042412 +
A07chromosomeA07:88771797..88771934 +
CM018221.1chromosomeCM018221.1:51122724..51122855 +
CM018208.1chromosomeCM018208.1:88745218..88745355 +
D5_07chromosomeD5_07:46501055..46501192 +
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:92089296..92089424 +
D10_07chromosomeD10_07:5033881..5034012 -
scaffold56.1supercontigscaffold56.1:307526..307657 +
scaffold4985.1supercontigscaffold4985.1:4474..4611 +
D07chromosomeD07:50236061..50236192 +
A07chromosomeA07:73272650..73272787 +
Ghir_D07chromosomeGhir_D07:54335215..54335346 +
Ghir_A07chromosomeGhir_A07:92606083..92606211 +
D07chromosomeD07:53579505..53579636 +
A07chromosomeA07:91630733..91630870 +
D07chromosomeD07:53875709..53875840 +
A07chromosomeA07:91592741..91592878 +
D07chromosomeD07:50347531..50347662 +
A07chromosomeA07:88084800..88084937 +
Dt07chromosomeDt07:55276535..55276672 +
Dt07chromosomeDt07:55274628..55274765 +
Dt07chromosomeDt07:55283719..55283850 +
scaffold11989supercontigscaffold11989:210781..210918 +
scaffold11989supercontigscaffold11989:208874..209011 +
scaffold11989supercontigscaffold11989:217965..218096 +
scaffold13089supercontigscaffold13089:8642..8779 -
Gbar_D07chromosomeGbar_D07:51488773..51488904 +
D07chromosomeD07:52199175..52199306 +
A07chromosomeA07:90068848..90068985 +
CM017629.1chromosomeCM017629.1:51968213..51968347 +
CM017616.1chromosomeCM017616.1:91689058..91689195 +
CM017655.1chromosomeCM017655.1:53000913..53001044 +
CM017642.1chromosomeCM017642.1:94673987..94674133 +
CM017707.1chromosomeCM017707.1:52114752..52114883 +
CM017694.1chromosomeCM017694.1:90035357..90035488 +
D07chromosomeD07:54427635..54427766 +
A07chromosomeA07:93680990..93681127 +
Chr07chromosomeChr07:95394930..95395058 +
Chr07chromosomeChr07:96777119..96777247 +
Chr07chromosomeChr07:4972614..4972751 -
B_07chromosomeB_07:77686913..77687041 +
Chr01chromosomeChr01:50944602..50944732 +
chr01chromosomechr01:38977488..38977616 +
Chr_01chromosomeChr_01:33807584..33807712 +
Chr01chromosomeChr01:50693965..50694093 +
Chr01chromosomeChr01:35633795..35633926 +
Chr01chromosomeChr01:28107192..28107323 +
Chr01chromosomeChr01:34788504..34788638 +
Chr01chromosomeCGR5520:2..337 .
Chr01:47102070..47102405 +
Chr1chromosomeCGR5520:2..337 .
Chr1:4871165..4871500 +
Germplasm
Stock NameType
Deltapine 33 Baccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS0493MONCS0493Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch07_At.07N/A96.9CGR5520View
2901-001 x sGK156, F2 (2019)AD_ch07_At.07N/A10.27CGR5520View
3LMY22 x LY343, RIL (2016)chr.7N/A19.2CGR5520View
4LMY22 x LY343, RIL (2020)A07N/A21.62CGR5520View
Sequence
>CGR5520 ID=CGR5520; Name=CGR5520; organism=Gossypium hirsutum; type=genetic_marker; length=138bp
ACGGGAAGTTGAGTCTGAGGTCGGACATGTGGCTTCAAAGTATTAGATAC
AGCAAACTTTTGATGTTGCCGATGCATATGAGACTGCTGCTGCTGCTGCT
GCTGCTGCTGCCTCTGCCTTTCTTTAGCAAGGCGCATG