CGR5382, CGR5382 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCGR5382
Genbank IDGQ393444
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 33 B
Source SequenceMONCS0409
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1CGR5382_F: GATTCCAGCGAAGGGAGAG
Primer 2CGR5382_R: TCGATCTAAAGCCGCAATCT
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ393444
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D02chromosomeD02:68047614..68047865 +
A03chromosomeA03:105688622..105688879 +
CM018216.1chromosomeCM018216.1:64398188..64398453 +
D5_03chromosomeD5_03:2548283..2548550 -
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:132723198..132723461 +
D10_03chromosomeD10_03:2484782..2485039 -
CM016616.1chromosomeCM016616.1:3494895..3495140 -
Dt_chr5chromosomeDt_chr5:9848533..9848784 +
scaffold1147.1supercontigscaffold1147.1:541882..542139 -
D02chromosomeD02:64670525..64670776 +
A03chromosomeA03:97427117..97427374 +
Ghir_D02chromosomeGhir_D02:67145020..67145271 +
Ghir_A03chromosomeGhir_A03:110075721..110075978 +
D02chromosomeD02:67181527..67181778 +
A03chromosomeA03:108753784..108754041 +
D02chromosomeD02:68470125..68470376 +
A03chromosomeA03:107182934..107183191 +
D02chromosomeD02:65584294..65584547 +
A03chromosomeA03:102458220..102458477 +
A03chromosomeA03:102434251..102434508 +
Gbar_D02chromosomeGbar_D02:64999771..65000038 +
Gbar_A03chromosomeGbar_A03:102374507..102374782 +
D02chromosomeD02:66216509..66216778 +
A03chromosomeA03:104705249..104705526 +
CM017612.1chromosomeCM017612.1:104080780..104081037 +
CM017650.1chromosomeCM017650.1:68925540..68925799 +
CM017638.1chromosomeCM017638.1:111196577..111196826 +
CM017702.1chromosomeCM017702.1:65814173..65814440 +
D02chromosomeD02:69480436..69480687 +
A03chromosomeA03:110755679..110755936 +
Chr03chromosomeChr03:2914027..2914284 -
Chr03chromosomeChr03:2983422..2983685 -
Chr03chromosomeChr03:60528036..60528303 +
B_03chromosomeB_03:3017340..3017607 -
Chr05chromosomeChr05:63558684..63558943 +
chr05chromosomechr05:48059353..48059721 +
Chr_05chromosomeChr_05:41402485..41402752 +
Chr05chromosomeChr05:65042656..65042913 +
Chr05chromosomeChr05:42199907..42200164 +
Chr05chromosomeChr05:35646092..35646495 +
Chr05chromosomeChr05:43786430..43786685 +
E03chromosomeE03:122729387..122729636 +
Chr03chromosomeChr03:3440933..3441178 -
Germplasm
Stock NameType
Deltapine 33 Baccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS0409MONCS0409Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch14_Dt.02N/A139.4CGR5382View
2CCRI-35 x Yumian-1, RIL (2015)AD_ch14_Dt.02N/A13.8CGR5382View
3901-001 x sGK156, F2 (2019)AD_ch03_At.03N/A29.42CGR5382View
4Monsanto SSR Bin Map, (2009)AD_ch03_At.03N/A101CGR5382View
5CCRI-35 x Yumian-1, RIL (2017)AD_ch14_Dt.02N/A127.29CGR5382View
Sequence
>CGR5382 ID=CGR5382; Name=CGR5382; organism=Gossypium hirsutum; type=genetic_marker; length=167bp
GATTCCAGCGAAGGGAGAGGAGACACACACACACACACACACACAGAGAT
CTTCAAATTTCATCAATGGATCATTCAAAGGTTCAAGAGATCGTGGAGAA
GCAGGTATTGACGGTGGCGAAGGCCTTCGAGGACCAGATCGACGAAGAGA
TTGCGGCTTTAGATCGA