CGR5326, CGR5326 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCGR5326
Genbank IDGQ393416
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 33 B
Source SequenceMONCS0381
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1CGR5326_F: TCAAGGCCACTTTCCATTTC
Primer 2CGR5326_R: AACATCCCAAGTCTTGTCGG
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ393416
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D01chromosomeD01:61700032..61700226 -
A01chromosomeA01:100949932..100950129 -
CM018215.1chromosomeCM018215.1:60203900..60204097 -
CM018202.1chromosomeCM018202.1:110222786..110222989 -
D5_01chromosomeD5_01:54133709..54133905 -
KI_01chromosomeKI_01:35903179..35903361 -
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:96455081..96455275 -
D10_01chromosomeD10_01:2462424..2462633 +
CM016614.1chromosomeCM016614.1:134123711..134123896 -
scaffold42.1supercontigscaffold42.1:1588598..1588795 -
scaffold238.1supercontigscaffold238.1:1024658..1024852 -
D01chromosomeD01:58851840..58852034 -
A01chromosomeA01:97010710..97010907 -
Ghir_D01chromosomeGhir_D01:60576602..60576796 -
Ghir_A01chromosomeGhir_A01:114686670..114686867 -
D01chromosomeD01:62107655..62107849 -
A01chromosomeA01:115179488..115179685 -
D01chromosomeD01:61990455..61990649 -
A01chromosomeA01:112984414..112984611 -
D01chromosomeD01:58760255..58760449 -
A01chromosomeA01:109774343..109774540 -
At01chromosomeAt01:80517378..80517581 -
scaffold196supercontigscaffold196:131323..131520 +
scaffold30102supercontigscaffold30102:35836..36039 -
Gbar_D01chromosomeGbar_D01:60452897..60453094 -
Gbar_A01chromosomeGbar_A01:112709363..112709566 -
D01chromosomeD01:61094957..61095154 -
A01chromosomeA01:112705017..112705220 -
CM017623.1chromosomeCM017623.1:61357429..61357626 -
CM017610.1chromosomeCM017610.1:111175548..111175745 -
CM017649.1chromosomeCM017649.1:62898632..62898823 -
CM017636.1chromosomeCM017636.1:118699701..118699901 -
CM017701.1chromosomeCM017701.1:60857266..60857463 -
CM017688.1chromosomeCM017688.1:108851129..108851326 -
D01chromosomeD01:62479546..62479740 -
A01chromosomeA01:116640874..116641071 -
Chr01chromosomeChr01:119904382..119904576 -
Chr02chromosomeChr02:2961578..2961772 +
Chr01chromosomeChr01:49937576..49937773 -
B_01chromosomeB_01:95297019..95297309 -
Chr02chromosomeChr02:58822592..58822801 -
chr02chromosomechr02:45077136..45077342 -
Chr_02chromosomeChr_02:39990290..39990493 -
Chr02chromosomeChr02:59667865..59668077 -
Chr02chromosomeChr02:43445620..43445811 -
Chr02chromosomeChr02:34289027..34289236 -
Chr02chromosomeChr02:41996109..41996670 -
E01chromosomeE01:113570402..113570587 -
F01chromosomeF01:95976562..95976747 -
Chr01chromosomeChr01:3509066..3509251 +
Germplasm
Stock NameType
Deltapine 33 Baccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS0381MONCS0381Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch01_At.01N/A35CGR5326View
2Monsanto SSR Bin Map, (2009)AD_ch01_At.01N/A41CGR5326View
Sequence
>CGR5326 ID=CGR5326; Name=CGR5326; organism=Gossypium hirsutum; type=genetic_marker; length=198bp
TCAAGGCCACTTTCCATTTCCATTAAAGCCTCAAATTCCCAAACCAGTAC
CAAAGAAGAAGAAAACCCAAGCTTTTCTTCTTCTTCTTCTTCTTCTTCTT
CTACTACTAGTACAGCTACAACTTTTGCTCCTCCTCCCAACTTCAAGCCG
CCAGAGCCAAAGCCATTTGCAATTAGGCCCGACAAGACTTGGGATGTT