CGR5120, CGR5120 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCGR5120
Genbank IDGQ393253
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 33 B
Source SequenceMONCS0218
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1CGR5120_F: CCCATCCTTAGCTTCAACACA
Primer 2CGR5120_R: GGAGTCGAGTGGATGAGGAG
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ393253
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D08chromosomeD08:24648818..24648957 +
A08chromosomeA08:36552437..36552574 +
CM018222.1chromosomeCM018222.1:23080452..23080573 +
D5_08chromosomeD5_08:21791466..21791604 +
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:50067905..50068042 +
D10_08chromosomeD10_08:28898851..28898978 +
CM016621.1chromosomeCM016621.1:96001356..96001481 -
Dt_chr4chromosomeDt_chr4:15285727..15285866 +
Dt_chr4chromosomeDt_chr4:37165195..37165332 -
D08chromosomeD08:23000766..23000905 +
A08chromosomeA08:32636320..32636457 +
Ghir_D08chromosomeGhir_D08:23238697..23238834 +
D08chromosomeD08:22728142..22728281 +
A08chromosomeA08:44667849..44667986 -
D08chromosomeD08:22475366..22475505 +
A08chromosomeA08:44670898..44671035 -
D08chromosomeD08:22931384..22931523 +
A08chromosomeA08:32342982..32343113 +
scaffold7078supercontigscaffold7078:35280..35411 -
scaffold6813supercontigscaffold6813:128113..128244 -
scaffold6813supercontigscaffold6813:129687..129808 -
Gbar_D08chromosomeGbar_D08:22987385..22987506 +
Scaffold1611supercontigScaffold1611:212706..212837 -
D08chromosomeD08:23232789..23232910 +
A08chromosomeA08:41782901..41783032 -
CM017630.1chromosomeCM017630.1:23080141..23080268 +
CM017617.1chromosomeCM017617.1:43096121..43096252 -
CM017656.1chromosomeCM017656.1:24824288..24824415 +
CM017643.1chromosomeCM017643.1:46576684..46576815 -
CM017708.1chromosomeCM017708.1:23186748..23186869 +
CM017695.1chromosomeCM017695.1:42119789..42119920 -
D08chromosomeD08:23319272..23319411 +
A08chromosomeA08:45841668..45841805 -
Chr08chromosomeChr08:47741586..47741717 -
Chr08chromosomeChr08:47138409..47138546 -
Chr08chromosomeChr08:21804964..21805103 +
B_08chromosomeB_08:36278478..36278603 +
Chr04chromosomeChr04:22317763..22317890 +
chr04_6432705chromosomechr04_6432705:2693..2826 -
Chr_04chromosomeChr_04:15968916..15969043 +
Chr04chromosomeChr04:23460137..23460258 +
Chr04chromosomeChr04:15636142..15636351 +
Chr04chromosomeChr04:15549221..15549342 +
Chr08chromosomeChr08:124613349..124613474 -
Germplasm
Stock NameType
Deltapine 33 Baccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS0218MONCS0218Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch08_At.08N/A64.9CGR5120View
2TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch24_Dt.08N/A56CGR5120View
3W10 x TM-1, F2:3 (2015)AD_ch08_At.08N/A25.9CGR5120View
4Monsanto SSR Bin Map, (2009)AD_ch24_Dt.08N/A81CGR5120View
5(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch08_At.08N/A20.3MON_CGR5120View
6Yumian-1 x 7235, RIL (2015)AD_ch08_At.08N/A62CGR5120aView
7Yumian-1 x 7235, RIL (2015)AD_ch24_Dt.08N/A51.5CGR5120bView
8TM-1 x Hai-7124, BC1 (2012)AD_ch24_Dt.08N/A77.7cgr5120-130View
Sequence
>CGR5120 ID=CGR5120; Name=CGR5120; organism=Gossypium hirsutum; type=genetic_marker; length=140bp
CCCATCCTTAGCTTCAACACATTCATTTCATTCTTCATCAATGGCTTCTT
CTCTCAATTTAACCACTCTTTCTCTTACTTTACCCATTCCCCATCCCCAT
CCCCATCCCCATCCCCGTCCCTCCTCATCCACTCGACTCC