CER0105, CER0105 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCER0105
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
Source SequenceMONCS0113
Source TypeEST
PCR ConditionAnnealing temperature: 55
Primer 1CER0105_F: AGGCGCAAATAGCAAACAAC
Primer 2CER0105_R: GCAACCCAAACATCGGATAC
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D09chromosomeD09:45607351..45607485 +
A09chromosomeA09:73981195..73981337 +
CM018223.1chromosomeCM018223.1:43365578..43365712 +
CM018210.1chromosomeCM018210.1:69303257..69303399 +
D5_09chromosomeD5_09:36878935..36879079 +
KI_09chromosomeKI_09:32936754..32936916 +
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:77923892..77924048 +
D10_09chromosomeD10_09:6786691..6786853 -
CM016622.1chromosomeCM016622.1:10528903..10529053 -
scaffold1788.1supercontigscaffold1788.1:82010..82152 -
Dt_chr6chromosomeDt_chr6:7044535..7044669 -
scaffold2301_A09supercontigscaffold2301_A09:50146..50288 +
D09chromosomeD09:43437107..43437241 +
Ghir_D09chromosomeGhir_D09:45404050..45404184 +
Ghir_A09chromosomeGhir_A09:73650375..73650515 +
D09chromosomeD09:44865869..44866003 +
A09chromosomeA09:75238313..75238455 +
D09chromosomeD09:45160372..45160506 +
A09chromosomeA09:75421177..75421319 +
D09chromosomeD09:43242916..43243050 +
A09chromosomeA09:72061213..72061357 +
Dt09chromosomeDt09:45649127..45649269 +
Dt09chromosomeDt09:45641879..45642013 +
scaffold10361supercontigscaffold10361:18964..19106 +
scaffold10361supercontigscaffold10361:11716..11850 +
scaffold12358supercontigscaffold12358:19892..20034 -
scaffold12358supercontigscaffold12358:23865..23999 -
Gbar_D09chromosomeGbar_D09:44005739..44005873 +
Gbar_A09chromosomeGbar_A09:69828442..69828584 +
D09chromosomeD09:46472344..46472478 +
A09chromosomeA09:71280996..71281138 +
CM017631.1chromosomeCM017631.1:44238865..44238999 +
CM017618.1chromosomeCM017618.1:71199016..71199160 +
CM017657.1chromosomeCM017657.1:45624176..45624310 +
CM017644.1chromosomeCM017644.1:74117068..74117212 +
CM017709.1chromosomeCM017709.1:44865861..44865995 +
CM017696.1chromosomeCM017696.1:71331253..71331397 +
D09chromosomeD09:46872075..46872209 +
A09chromosomeA09:76888814..76888956 +
Chr09chromosomeChr09:76000679..76000825 +
Chr09chromosomeChr09:78848968..78849124 +
Chr09chromosomeChr09:43095489..43095633 +
B_09chromosomeB_09:62588929..62589075 +
Chr06chromosomeChr06:43666887..43667049 +
chr06chromosomechr06:36019172..36019421 +
Chr_06chromosomeChr_06:30180765..30180988 +
Chr06chromosomeChr06:44876029..44876192 +
Chr06chromosomeChr06:33252077..33252344 +
Chr06chromosomeChr06:25071389..25071535 +
Chr06chromosomeChr06:30801431..30801585 +
E09chromosomeE09:9367459..9367601 -
F09chromosomeF09:63582830..63582992 +
Chr09chromosomeChr09:122553598..122553746 +
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS0113MONCS0113Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch09_At.09N/A90.2CER0105View
2W10 x TM-1, F2:3 (2015)AD_ch09_At.09N/A27.3CER0105View
30-153 x sGK9708, RIL (2016)AD_ch09_At.09N/A0CER0105View
4CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch09_At.09N/A120.9CER0105View
Sequence
>CER0105 ID=CER0105; Name=CER0105; organism=Gossypium hirsutum; type=genetic_marker; length=143bp
AGGCGCAAATAGCAAACAACGAAACCAAGTCATTTTCGTGAGTAGATTCA
GAACCCTCCATCAAAATAGATTAATTTCTCTCTCTCTCTCTCTCTCTTTG
GTGATACGCCGTCGATTTTGTGAGTATCCGATGTTTGGGTTGC