C2-00044, C2-00044 (genetic_marker) Gossypium hirsutum

Marker Overview
NameC2-00044
AliasC2-044
Genbank IDGQ393052
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 20
Source SequenceMONCS0033
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1C2-00044_F: AAAGTTTAAAAGTGTGTGA
Primer 2C2-00044_R: TGGAAGGACGGGATAATTT
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ393052
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D08chromosomeD08:64395901..64396120 +
D08chromosomeD08:64404875..64405097 +
D04chromosomeD04:26399912..26400137 +
D04chromosomeD04:26482501..26482726 +
D04chromosomeD04:32430547..32430772 +
D04chromosomeD04:26380519..26380744 +
CM018222.1chromosomeCM018222.1:60623595..60623817 +
CM018222.1chromosomeCM018222.1:60614611..60614833 +
CM018218.1chromosomeCM018218.1:31702457..31702682 +
CM018218.1chromosomeCM018218.1:22975640..22975868 +
CM018218.1chromosomeCM018218.1:22985111..22985339 +
D5_11chromosomeD5_11:39075198..39075427 +
D5_11chromosomeD5_11:53736959..53737191 +
scaffold862.1supercontigscaffold862.1:294446..294671 -
scaffold862.1supercontigscaffold862.1:285494..285716 -
Dt_chr12chromosomeDt_chr12:32441435..32441660 -
Dt_chr12chromosomeDt_chr12:32432048..32432273 -
Dt_chr12chromosomeDt_chr12:14142466..14142691 -
scaffold65394supercontigscaffold65394:34..253 +
D08chromosomeD08:61202153..61202375 +
D04chromosomeD04:23573132..23573357 +
D04chromosomeD04:28476401..28476626 +
Ghir_D08chromosomeGhir_D08:63593886..63594105 +
Ghir_D08chromosomeGhir_D08:63602859..63603080 +
Ghir_D04chromosomeGhir_D04:24003810..24004035 +
Ghir_D04chromosomeGhir_D04:33453989..33454214 +
D08chromosomeD08:64016620..64016839 +
D08chromosomeD08:64025584..64025806 +
D04chromosomeD04:23635488..23635713 +
D04chromosomeD04:34682849..34683074 +
D04chromosomeD04:23625996..23626221 +
D04chromosomeD04:23650881..23651106 +
D04chromosomeD04:33582111..33582336 +
D04chromosomeD04:23641397..23641622 +
D08chromosomeD08:60731866..60732088 +
D04chromosomeD04:23201761..23201986 +
D04chromosomeD04:31225332..31225557 +
D04chromosomeD04:23192272..23192497 +
Dt08chromosomeDt08:63492365..63492593 +
scaffold14868supercontigscaffold14868:1324..1552 +
scaffold8398supercontigscaffold8398:126942..127170 -
scaffold8398supercontigscaffold8398:113914..114142 -
scaffold3516supercontigscaffold3516:222719..222944 -
scaffold3516supercontigscaffold3516:223278..223506 -
Gbar_D08chromosomeGbar_D08:60742326..60742548 +
Gbar_D08chromosomeGbar_D08:60733345..60733567 +
Gbar_D04chromosomeGbar_D04:29904463..29904688 +
Gbar_D04chromosomeGbar_D04:23058533..23058761 +
Gbar_D04chromosomeGbar_D04:23068004..23068232 +
scaffold629_subseq_8025098_8034631_objsupercontigscaffold629_subseq_8025098_8034631_obj:1077..1299 +
D08chromosomeD08:62599891..62600113 +
D04chromosomeD04:35087278..35087503 +
D04chromosomeD04:23041660..23041888 +
CM017630.1chromosomeCM017630.1:62339770..62339992 +
CM017630.1chromosomeCM017630.1:62330781..62331003 +
CM017626.1chromosomeCM017626.1:23015739..23015967 +
CM017626.1chromosomeCM017626.1:23006294..23006513 +
CM017656.1chromosomeCM017656.1:64502691..64502916 +
CM017656.1chromosomeCM017656.1:64493693..64493918 +
CM017652.1chromosomeCM017652.1:24688615..24688840 +
CM017652.1chromosomeCM017652.1:24667727..24667949 +
CM017652.1chromosomeCM017652.1:34730066..34730288 +
CM017708.1chromosomeCM017708.1:61031221..61031443 +
CM017708.1chromosomeCM017708.1:61022239..61022461 +
CM017704.1chromosomeCM017704.1:32258828..32259053 +
CM017704.1chromosomeCM017704.1:22925499..22925724 +
D08chromosomeD08:64215914..64216133 +
D08chromosomeD08:64224887..64225109 +
D04chromosomeD04:24384984..24385209 +
D04chromosomeD04:35018858..35019083 +
D04chromosomeD04:24375497..24375722 +
Chr11chromosomeChr11:36938405..36938634 +
Chr11chromosomeChr11:51222847..51223079 +
Germplasm
Stock NameType
Deltapine 20accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS0033MONCS0033Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1W10 x TM-1, F2:3 (2015)AD_ch24_Dt.08N/A0C2-0044View
Sequence
>C2-00044 ID=C2-00044; Name=C2-00044; organism=Gossypium hirsutum; type=genetic_marker; length=226bp
AAAGTTTAAAAGTGTGTGAATAATAATAATAATAATGTTAACAATAATAA
CAATAAATAAAATAAAATAAGGGTATAGCATAATTATGATAAGAAACTAA
AATGGATTGAATTGARTTAAAAACGAAAGAAATGGGCGGATTTAGAATAA
ATTTAAAAAAGAAAGGACCCAATTGAATGCGCGCGTGACATCGGAGGACC
AAAAGGGAAATTATCCCGTCCTTCCA