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Marker Overview
Name | BNL4029 |
Genbank ID | N/A |
Type | SSR |
Species | Gossypium hirsutum |
Germplasm | Deltapine 90 |
Source Sequence | BNL4029_orig
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Source Type | genomic |
Repeat Motif | (TG)12, (AC)10 |
PCR Condition | Annealing temperature: 55 |
Primer 1 | BNL4029_F: CGAGGGATAGAGAGGACGAA |
Primer 2 | BNL4029_R: GTTTGATTATTATGCTTGTAAAGTTACC |
Polymorphism | P_ BNL4029 |
Comment | Primer data obtained in 2000 |
Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Image
File Name | Legend |
48_FISH_TAG-115-675.jpg | Twenty-six individual cotton mitotic chromosomes with FISH signals derived from the chromosome-speciWc BACs, and comparisons of linkage and FISH maps. [Image from Wang 2007, TAG-115-675] |
Map Positions
# | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
1 | CCRI-36 x Hai-7124, F2 (2007) | AD_ch13_At.13 | N/A | 78.9 | BNL4029a | View |
2 | TM-1 x 3-79, RIL (2012) | AD_ch13_At.13 | N/A | 76.42 | BNL4029a | View |
3 | TM-1 x 3-79, RIL (2014) | AD_ch13_At.13 | N/A | 72.7 | BNL4029a | View |
4 | Monsanto SSR Bin Map, (2009) | AD_ch13_At.13 | N/A | 81 | BNL4029a | View |
5 | CCRI-36 x Hai-7124, F2 (2007) | AD_ch18_Dt.13 | N/A | 121.9 | BNL4029b | View |
6 | TM-1 x 3-79, RIL (2012) | AD_ch18_Dt.13 | N/A | 47.97 | BNL4029b | View |
7 | TM-1 x 3-79, RIL (2014) | AD_ch18_Dt.13 | N/A | 48.8 | BNL4029b | View |
8 | Monsanto SSR Bin Map, (2009) | AD_ch18_Dt.13 | N/A | 61 | BNL4029b | View |
9 | Deltapine-61 x Texas-701, F2 (2007) | AD_ch13_At.13 | N/A | 13.7 | BNL4029-403 | View |
10 | Deltapine-61 x Texas-701, F2 (2007) | AD_ch13_At.13 | N/A | 22 | BNL4029-244 | View |
11 | Emian-22 x 3-79, BC1 (2011) | AD_ch13_At.13 | N/A | 106.04 | BNL4029 | View |
12 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch13_At.13 | N/A | 81.69 | BNL4029 | View |
13 | Guazuncho-2 x VH8-4602, RIL (2009) | AD_ch13_At.13 | N/A | 32.48 | BNL4029 | View |
14 | AD-genome wide Reference Map (2009) | AD_ch18_Dt.13 | N/A | 14 | BNL4029 | View |
15 | Yumian-1 x T586, F2:3 (2005) | AD_ch13_At.13 | N/A | 0 | BNL4029 | View |
16 | Yumian-1 x T586, F2:7 (2008) | AD_ch13_At.13 | N/A | 6.9 | BNL4029 | View |
17 | AD-genome wide Reference Map (2009) | AD_ch13_At.13 | N/A | 70 | BNL4029 | View |
18 | Yumian-1 x T586, RIL (2006) | AD_ch13_At.13 | N/A | 20.7 | BNL4029 | View |
19 | Yumian-1 x T586, F2:3 (2005.v0) | AD_ch01_At.01 | N/A | 0 | BNL4029 | View |
20 | Yumian-1 x T586, F2:3 (2005.v0) | AD_ch13_At.13 | N/A | 0 | BNL4029 | View |
21 | H18 x TM-1, F2 (2005) | AD_ch13_At.13 | N/A | 108.4 | BNL4029 | View |
22 | DH962 x Jinmian-6, F2 (2009) | AD_ch18_Dt.13 | N/A | 22.5 | BNL4029 | View |
23 | DH962 x Jinmian-6, F2 (2009) | AD_ch18_Dt.13 | N/A | 22.5 | BNL4029 | View |
24 | Yumian-1 x T586, RIL (2015) | AD_ch13_At.13 | N/A | 70.2 | BNL4029 | View |
25 | DH962 X Ji Mian 5, F2 (2015) | AD_ch25_Dt.06 | N/A | 76.63 | BNL4029 | View |
26 | Emian-22 x 3-79, BC1 (2015) | AD_ch13_At.13 | N/A | 100.3 | BNL4029 | View |
27 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch13_At.13 | N/A | 84.6 | BNL4029 | View |
28 | TM-1 x Hai-7124, BC1 (2008) | AD_ch13_At.13 | N/A | 40.5 | BNL4029-245 | View |
29 | Vsg x (TM-1 x Hai-7124), DH (2005) | AD_ch13_At.13 | N/A | 18.8 | BNL4029-245 | View |
30 | TM-1 x Hai-7124, BC1 (2007) | AD_ch13_At.13 | N/A | 79 | BNL4029-245 | View |
31 | TM-1 x Hai-7124, BC1 (2012) | AD_ch13_At.13 | N/A | 59.9 | BNL4029-245 | View |
32 | Yumian-1 x T586, RIL (2009) | AD_ch13_At.13 | N/A | 9.1 | BNL4029/270y(C13) | View |
33 | TM-1 x 3-79, RIL (2012.v3) | AD_ch13_At.13 | N/A | 72.72 | BNL4029a | View |
34 | TM-1 x 3-79, RIL (2012.v3) | AD_ch18_Dt.13 | N/A | 48.78 | BNL4029b | View |
35 | PD 94042 x (AD)4-08, F2 (2016) | AD_ch13_At.13 | N/A | 17.3 | BNL4029 | View |
Sequence
>BNL4029 ID=BNL4029; Name=BNL4029; organism=Gossypium hirsutum; type=genetic_marker; length=247bp CGAGGGATAGAGAGGACGAAAGTACCAAAATTGCTTCAAAAACAAAACTA AAGGAGCAAGGTCTGTTTGTCTATTTTTTCTCCATTTTGAAAATTCGAGG AAATTTATCTATATGCAAAAAGAAAATGCAGTACAATATTCAGCAGCATC AATATCCAATAAATCCACATTGTTCATATAATTAGATATGTGTGTGTGTG TGTGTGTGTGTGAGAGACAGGTAACTTTACAAGCATAATAATCAAAC
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