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Marker Overview
| Name | BNL3994 |
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| Genbank ID | N/A |
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| Type | SSR |
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| Species | Gossypium hirsutum |
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| Germplasm | Deltapine 90 |
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| Source Sequence | BNL3994_orig
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| Source Type | genomic |
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| Repeat Motif | (CT)25, (GA)25 |
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| PCR Condition | Annealing temperature: 55 |
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| Primer 1 | BNL3994_F: TTGAGGGCATCCAAATCCAT |
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| Primer 2 | BNL3994_R: CCTCCACCATACACGTGCTA |
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| Polymorphism | P_ BNL3994 |
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| Comment | Primer data obtained in 2000 |
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Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Map Positions
| # | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
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| 1 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch22_Dt.04 | N/A | 53.05 | BNL3994 | View |
| 2 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch04_At.04 | N/A | 62.47 | BNL3994 | View |
| 3 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch04_At.04 | N/A | 46.5 | BNL3994 | View |
| 4 | AD-genome wide Reference Map (2009) | AD_ch04_At.04 | N/A | 103 | BNL3994 | View |
| 5 | TM-1 x 3-79, RIL (2012) | AD_ch22_Dt.04 | N/A | 25.24 | BNL3994 | View |
| 6 | Xinluzao-1 x Hai-7124, F2 (2008) | AD_ch04_At.04 | N/A | 27.7 | BNL3994 | View |
| 7 | Zhongmiansuo-12 x 8891, RIL (2007) | AD_ch26_Dt.12 | N/A | 0 | BNL3994 | View |
| 8 | Acala-44 x Pima S-7, F2 (2004) | AD_ch20_Dt.10 | N/A | 66 | BNL3994 | View |
| 9 | Emian-22 x 3-79, BC1 (2011) | AD_ch04_At.04 | N/A | 87.2 | BNL3994 | View |
| 10 | AD-genome wide Reference Map (2009) | AD_ch22_Dt.04 | N/A | 80 | BNL3994 | View |
| 11 | AD-genome wide Reference Map (2009) | AD_ch26_Dt.12 | N/A | 214 | BNL3994 | View |
| 12 | DH962 x Jinmian-6, F2 (2009) | AD_ch04_At.04 | N/A | 65.1 | BNL3994 | View |
| 13 | DH962 x Jinmian-6, F2 (2009) | AD_ch04_At.04 | N/A | 65.1 | BNL3994 | View |
| 14 | HS427-10 x TM-1, F2:3 (2005) | AD_ch26_Dt.12 | N/A | 0 | BNL3994 | View |
| 15 | PD6992 x SM3, F2:3 (2005) | AD_ch26_Dt.12 | N/A | 0 | BNL3994 | View |
| 16 | Yumian-1 x 7235, RIL (2015) | AD_ch04_At.04 | N/A | 15 | BNL3994 | View |
| 17 | DH962 X Ji Mian 5, F2 (2015) | AD_ch04_At.04 | N/A | 22.91 | BNL3994 | View |
| 18 | TM-1 x 3-79, RIL (2014) | AD_ch22_Dt.04 | N/A | 56.4 | BNL3994 | View |
| 19 | TM-1 x (TX-0256 + TX-1046), CSIL (2016) | AD_ch22_Dt.04 | N/A | 31.9 | BNL3994 | View |
| 20 | DH962 x Ji Mian 5, RIL (2015) | AD_ch04_At.04 | N/A | 21.7 | BNL3994 | View |
| 21 | CCRI-35 x Yumian-1, RIL (2015) | AD_ch22_Dt.04 | N/A | 45.8 | BNL3994 | View |
| 22 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch04_At.04 | N/A | 104.6 | BNL3994b | View |
| 23 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch22_Dt.04 | N/A | 177.6 | BNL3994b | View |
| 24 | Monsanto SSR Bin Map, (2009) | AD_ch22_Dt.04 | N/A | 41 | BNL3994b | View |
| 25 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch22_Dt.04 | N/A | 79.2 | BNL3994a | View |
| 26 | (YM1 x CCRI35) x (YM1 x 7235), 4WC (2012) | AD_ch04_At.04 | N/A | 0 | BNL3994a | View |
| 27 | Monsanto SSR Bin Map, (2009) | AD_ch04_At.04 | N/A | 81 | BNL3994a | View |
| 28 | HS-46 x MARCABUCAG8US-1-88, RIL (2009) | AD_ch04_At.04 | N/A | 1 | BNL3994-95 | View |
| 29 | Vsg x (TM-1 x Hai-7124), DH (2005) | AD_ch22_Dt.04 | N/A | 42.6 | BNL3994-175 | View |
| 30 | TM-1 x Hai-7124, BC1 (2007) | AD_ch26_Dt.12 | N/A | 109.9 | BNL3994-175 | View |
| 31 | TM-1 x Hai-7124, BC1 (2008) | AD_ch26_Dt.12 | N/A | 108.21 | BNL3994-175 | View |
| 32 | TM-1 x Hai-7124, BC1 (2012) | AD_ch26_Dt.12 | N/A | 109.9 | BNL3994-175 | View |
| 33 | CCRI-35 x Yumian-1, RIL (2017) | AD_ch22_Dt.04 | N/A | 71.69 | BNL3994 | View |
| 34 | TM-1 x 3-79, RIL (2012.v3) | AD_ch22_Dt.04 | N/A | 56.39 | BNL3994 | View |
| 35 | PD 94042 x (AD)4-08, F2 (2016) | AD_ch04_At.04 | N/A | 96.5 | BNL3994 | View |
Sequence
>BNL3994 ID=BNL3994; Name=BNL3994; organism=Gossypium hirsutum; type=genetic_marker; length=126bp
TTGAGGGCATCCAAATCCATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGTTGACAGAGAAAGTAGGGATAATTTCCTT
TGACATTAGCACGTGTATGGTGGAGG
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