BNL3993, BNL3993 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL3993
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL3993_orig
Source Typegenomic
Repeat Motif(TC)16, (TC)15
PCR ConditionAnnealing temperature: 55
Primer 1BNL3993_F: TGTTTGTTTCCCTCACTCCC
Primer 2BNL3993_R: TCCAAAGAGACGTCAATCCA
PolymorphismP_ BNL3993
CommentPrimer data obtained in 2000
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D10chromosomeD10:41735811..41736014 +
CM018224.1chromosomeCM018224.1:40553660..40553855 +
D5_10chromosomeD5_10:23996740..23996936 -
Dt_chr11chromosomeDt_chr11:32515977..32516180 +
D10chromosomeD10:39957789..39958000 +
Ghir_D10chromosomeGhir_D10:42591375..42591578 +
D10chromosomeD10:42461708..42461911 +
D10chromosomeD10:41674086..41674289 +
D10chromosomeD10:40211653..40211856 +
scaffold2373supercontigscaffold2373:244424..244619 -
Gbar_D10chromosomeGbar_D10:39995906..39996101 +
D10chromosomeD10:41364391..41364586 +
CM017632.1chromosomeCM017632.1:40468983..40469179 +
CM017658.1chromosomeCM017658.1:42155402..42155619 +
CM017710.1chromosomeCM017710.1:41577861..41578042 +
D10chromosomeD10:42411557..42411760 +
Chr10chromosomeChr10:38456683..38456877 +
Chr11chromosomeChr11:26152989..26153189 -
Chr11chromosomeBNL3993:1..381 .
Chr11:38859296..38859667 +
scaffold660supercontigBNL3993:1..381 .
scaffold660:462..833 -
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL3993_origBNL3993_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Acala-44 x Pima S-7, F2 (2004)AD_chUN/A26.9BNL3993View
2CCRI-36 x Hai-7124, F2 (2007)AD_ch20_Dt.10N/A48.5BNL3993View
3Emian-22 x 3-79, BC1 (2011)AD_ch20_Dt.10N/A70.03BNL3993View
4Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch20_Dt.10N/A158.3BNL3993View
5Xinluzao-1 x Hai-7124, F2 (2008)AD_ch10_At.10N/A172.8BNL3993View
6Guazuncho-2 x VH8-4602, consensus (2009)AD_ch20_Dt.10N/A93.92BNL3993View
7Handan-208 x Pima-90, F2:3 (2007)AD_ch20_Dt.10N/A172.1BNL3993View
8AD-genome wide Reference Map (2009)AD_ch10_At.10N/A233BNL3993View
9AD-genome wide Reference Map (2009)AD_ch13_At.13N/A145BNL3993View
10AD-genome wide Reference Map (2009)AD_ch20_Dt.10N/A104BNL3993View
11TM-1 x Hai-7124, BC1 (2007)AD_ch13_At.13N/A71.6BNL3993-135View
12TM-1 x Hai-7124, BC1 (2008)AD_ch13_At.13N/A71.45BNL3993-135View
13TM-1 x Hai-7124, BC1 (2012)AD_ch13_At.13N/A66.2BNL3993-135View
14PD 94042 x (AD)4-08, F2 (2016)AD_ch20_Dt.10N/A103.6BNL3993View
Sequence
>BNL3993 ID=BNL3993; Name=BNL3993; organism=Gossypium hirsutum; type=genetic_marker; length=204bp
TGTTTGTTTCCCTCACTCCCCCTCTCACGTTGGACCCTTTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCCAAAATTCTAGATTTTGATTCTTTTGGCT
TATACGTTCTCTCTTTTCCAATGTCTTTTATTTTTTATTTTTTATTTTTC
AATATTTTCTCTCTTTTTTGTTTCAACATCATTGTGGATTGACGTCTCTT
TGGA