BNL3977, BNL3977 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL3977
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL3977_orig
Source Typegenomic
Repeat Motif(TC)19
PCR ConditionAnnealing temperature: 55
Primer 1BNL3977_F: ATCCAAACCAACCATGCAAT
Primer 2BNL3977_R: GAAGGGGTTTTGCATTTCAA
PolymorphismP_ BNL3977
CommentPrimer data obtained in 2000
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D05chromosomeD05:24763124..24763253 +
CM018219.1chromosomeCM018219.1:23391238..23391367 +
D5_05chromosomeD5_05:22137457..22137576 +
D10_05chromosomeD10_05:38256985..38257130 -
CM016618.1chromosomeCM016618.1:83728577..83728686 -
Dt_chr11chromosomeDt_chr11:4415206..4415335 -
D05chromosomeD05:23858393..23858522 +
Ghir_D05chromosomeGhir_D05:24061570..24061728 +
Ghir_A05chromosomeGhir_A05:26378882..26378987 +
Ghir_A13chromosomeGhir_A13:108029213..108029317 -
D05chromosomeD05:23444626..23444755 +
D05chromosomeD05:23900893..23901022 +
D05chromosomeD05:23781302..23781453 +
Dt05chromosomeDt05:24481228..24481357 +
At05chromosomeAt05:21855622..21855727 +
At05chromosomeAt05:21853588..21853693 +
scaffold33410supercontigscaffold33410:94983..95112 +
scaffold1761supercontigscaffold1761:609251..609356 +
scaffold1761supercontigscaffold1761:607217..607322 +
Gbar_D05chromosomeGbar_D05:23846200..23846327 +
Gbar_A05chromosomeGbar_A05:25218101..25218206 +
D05chromosomeD05:23659333..23659462 +
CM017627.1chromosomeCM017627.1:23567366..23567494 +
CM017653.1chromosomeCM017653.1:24044234..24044369 +
CM017705.1chromosomeCM017705.1:23722180..23722305 +
D05chromosomeD05:24384739..24384868 +
Chr05chromosomeChr05:22205222..22205341 +
B_05chromosomeB_05:59153023..59153146 -
Chr09chromosomeChr09:22788033..22788146 +
chr09chromosomechr09:20175296..20175466 +
Chr_09chromosomeChr_09:18626816..18627028 +
Chr09chromosomeChr09:23404566..23404675 +
Chr09chromosomeChr09:19462956..19463153 +
E05chromosomeE05:29489278..29489413 +
Chr09chromosomeBNL3977:1..432 .
Chr09:22029810..22030231 +
Chr9chromosomeBNL3977:1..432 .
Chr9:30505768..30506189 +
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL3977_origBNL3977_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1HS-46 x MARCABUCAG8US-1-88, RIL (2009)AD_ch11_At.11N/A21BNL3977-125View
2AD-genome wide Reference Map (2009)AD_ch19_Dt.05N/A194BNL3977View
3Xinluzao-1 x Hai-7124, F2 (2008)AD_ch19_Dt.05N/A214.7BNL3977View
4CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch19_Dt.05N/A92.8BNL3977View
5LMY28 x XLZ24, RIL (2018)AD_ch19_Dt.05N/A100.26BNL3977View
6Monsanto SSR Bin Map, (2009)AD_ch19_Dt.05N/A121BNL3977View
7PD 94042 x (AD)4-08, F2 (2016)AD_ch19_Dt.05N/A157.4BNL3977View
Sequence
>BNL3977 ID=BNL3977; Name=BNL3977; organism=Gossypium hirsutum; type=genetic_marker; length=130bp
ATCCAAACCAACCATGCAATAGTCCCCTCCCCCTTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCAATGCAAATGAAATTGTGCTGTTTAC
ATGGACTGTTTTGAAATGCAAAACCCCTTC