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Marker Overview
| Name | BNL3902 |
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| Genbank ID | N/A |
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| Type | SSR |
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| Species | Gossypium hirsutum |
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| Germplasm | Deltapine 90 |
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| Source Sequence | BNL3902_orig
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| Source Type | genomic |
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| Repeat Motif | (GT)18 |
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| PCR Condition | Annealing temperature: 55 |
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| Primer 1 | BNL3902_F: GAGTTTGGGGGCTGTGTATG |
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| Primer 2 | BNL3902_R: GGGGTGCTTATGTCAGACGT |
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| Polymorphism | P_ BNL3902 |
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| Comment | Primer data obtained in 2000 |
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Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Image
| File Name | Legend |
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| 48_FISH_TAG-115-675.jpg | Twenty-six individual cotton mitotic chromosomes with FISH signals derived from the chromosome-speciWc BACs, and comparisons of linkage and FISH maps. [Image from Wang 2007, TAG-115-675] |
Map Positions
| # | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
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| 1 | 3-79 x NM24016, RIL (2008) | AD_ch01_At.01 | N/A | 14.6 | BNL3902 | View |
| 2 | 7235 x TM-1, RIL (2007) | AD_ch15_Dt.01 | N/A | 13.2 | BNL3902 | View |
| 3 | Acala-44 x Pima S-7, F2 (2004) | AD_ch09_At.09 | N/A | 82.8 | BNL3902 | View |
| 4 | CCRI-36 x Hai-7124, F2 (2007) | AD_ch15_Dt.01 | N/A | 92.9 | BNL3902 | View |
| 5 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch15_Dt.01 | N/A | 91 | BNL3902 | View |
| 6 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch15_Dt.01 | N/A | 192.7 | BNL3902 | View |
| 7 | TM-1 x 3-79, RIL (2006) | AD_ch15_Dt.01 | N/A | 6.7 | BNL3902 | View |
| 8 | TM-1 x 3-79, RIL (2012) | AD_ch15_Dt.01 | N/A | 64.01 | BNL3902 | View |
| 9 | Xinluzao-1 x Hai-7124, F2 (2008) | AD_ch15_Dt.01 | N/A | 42.7 | BNL3902 | View |
| 10 | Yumian-1 x T586, F2:3 (2005) | AD_ch15_Dt.01 | N/A | 0 | BNL3902 | View |
| 11 | Emian-22 x 3-79, BC1 (2011) | AD_ch15_Dt.01 | N/A | 106.22 | BNL3902 | View |
| 12 | AD-genome wide Reference Map (2009) | AD_ch15_Dt.01 | N/A | 81 | BNL3902 | View |
| 13 | Yumian-1 x T586, RIL (2006) | AD_ch15_Dt.01 | N/A | 39.5 | BNL3902 | View |
| 14 | 7235 x TM-1, F2:3 (2005) | AD_ch15_Dt.01 | N/A | 28.7 | BNL3902 | View |
| 15 | Yumian-1 x T586, RIL (2015) | AD_ch15_Dt.01 | N/A | 53.9 | BNL3902 | View |
| 16 | Yumian-1 x 7235, RIL (2015) | AD_ch15_Dt.01 | N/A | 79.7 | BNL3902 | View |
| 17 | TM-1 x 3-79, RIL (2014) | AD_ch15_Dt.01 | N/A | 55.9 | BNL3902 | View |
| 18 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch15_Dt.01 | N/A | 82.9 | BNL3902 | View |
| 19 | Monsanto SSR Bin Map, (2009) | AD_ch15_Dt.01 | N/A | 41 | BNL3902 | View |
| 20 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch19_Dt.05 | N/A | 375.9 | BNL3902b | View |
| 21 | TM-1 x Hai-7124, BC1 (2007) | AD_ch15_Dt.01 | N/A | 64.1 | BNL3902-195 | View |
| 22 | TM-1 x Hai-7124, BC1 (2008) | AD_ch15_Dt.01 | N/A | 62.42 | BNL3902-195 | View |
| 23 | Vsg x (TM-1 x Hai-7124), DH (2005) | AD_ch15_Dt.01 | N/A | 11.4 | BNL3902-195 | View |
| 24 | TM-1 x Hai-7124, BC1 (2012) | AD_ch15_Dt.01 | N/A | 62.6 | BNL3902-195 | View |
| 25 | Yumian-1 x T586, RIL (2009) | AD_ch15_Dt.01 | N/A | 39.5 | BNL3902/190y(C15) | View |
| 26 | Yumian-1 x T586, F2:3 (2005.v0) | AD_ch15_Dt.01 | N/A | 0 | BNL3902(C15) | View |
| 27 | CCRI-35 x Yumian-1, RIL (2017) | AD_ch15_Dt.01 | N/A | 59.67 | BNL3902 | View |
| 28 | TM-1 x 3-79, RIL (2012.v3) | AD_ch15_Dt.01 | N/A | 55.89 | BNL3902 | View |
| 29 | PD 94042 x (AD)4-08, F2 (2016) | AD_ch15_Dt.01 | N/A | 145.5 | BNL3902 | View |
Sequence
>BNL3902 ID=BNL3902; Name=BNL3902; organism=Gossypium hirsutum; type=genetic_marker; length=192bp
GAGTTTGGGGGCTGTGTATGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGATCGATCTTACTGCGCCCATTCTTGTACCACACAATCAGTCT
TCTTGGGCTTAGTTTCAATCTACTGCCAACCATCATTTATGATAAAAAAA
ATCGAGGTGGACCTTATTATTTACGTCTGACATAAGCACCCC
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