BNL3874, BNL3874 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL3874
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL3874_orig
Source Typegenomic
Repeat Motif(AT)5+(G)+(TA)4+(TG)10
PCR ConditionAnnealing temperature: 55
Primer 1BNL3874_F: CATGTTCTAATCATATATATATGTATATATATGTGT
Primer 2BNL3874_R: AAAATAACAAAAGCCATGGAATAA
PolymorphismP_ BNL3874
CommentPrimer data obtained in 2000
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A09chromosomeA09:53889801..53890027 +
At_chr6chromosomeAt_chr6:39199222..39199450 +
A09chromosomeA09:48944040..48944266 +
Ghir_A09chromosomeGhir_A09:53910808..53911034 +
A09chromosomeA09:56300179..56300405 +
A09chromosomeA09:55749080..55749308 +
A09chromosomeA09:52556552..52556780 +
scaffold2281supercontigscaffold2281:117212..117443 -
A09chromosomeA09:56893651..56893877 +
Chr09chromosomeChr09:55499597..55499822 +
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL3874_origBNL3874_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1HS-46 x MARCABUCAG8US-1-88, RIL (2009)AD_ch09_At.09N/A22BNL3874-223View
2AD-genome wide Reference Map (2009)AD_ch09_At.09N/A36BNL3874View
3TM-1 x 3-79, RIL (2012)AD_ch09_At.09N/A106.59BNL3874View
4Xinluzao-1 x Hai-7124, F2 (2008)AD_ch09_At.09N/A17.7BNL3874View
5DH962 x Jinmian-6, F2 (2009)AD_ch09_At.09N/A47BNL3874View
6DH962 x Jinmian-6, F2 (2009)AD_ch09_At.09N/A47BNL3874View
7DH962 X Ji Mian 5, F2 (2015)AD_ch09_At.09N/A51.01BNL3874View
8DH962 X Ji Mian 5, F2 (2015)AD_ch09_At.09N/A51.01BNL3874View
9TM-1 x 3-79, RIL (2014)AD_ch09_At.09N/A35.6BNL3874View
10DH962 x Ji Mian 5, RIL (2015)AD_ch09_At.09N/A16.8BNL3874View
11Monsanto SSR Bin Map, (2009)AD_ch09_At.09N/A121BNL3874View
12TM-1 x 3-79, RIL (2012.v3)AD_ch09_At.09N/A35.6BNL3874View
Sequence
>BNL3874 ID=BNL3874; Name=BNL3874; organism=Gossypium hirsutum; type=genetic_marker; length=227bp
CATGTTCTAATCATATATATATGTATATATATGTGTGTGTGTGTGTGTGT
GTATATATTATAGCAATACAAGGCTAAAAAAAAGGAAATAATAGTCGTGT
TGACATTATAGTTTTTTTTTGACACACGACACTCTCCATTAGAAGTACTA
ATTTACATATTGGATTAATTACTCTTTTACTCCTTGCCTTTTAATTTTTT
AAGTTATTCCATGGCTTTTGTTATTTT