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Marker Overview
Name | BNL3874 |
Genbank ID | N/A |
Type | SSR |
Species | Gossypium hirsutum |
Germplasm | Deltapine 90 |
Source Sequence | BNL3874_orig
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Source Type | genomic |
Repeat Motif | (AT)5+(G)+(TA)4+(TG)10 |
PCR Condition | Annealing temperature: 55 |
Primer 1 | BNL3874_F: CATGTTCTAATCATATATATATGTATATATATGTGT |
Primer 2 | BNL3874_R: AAAATAACAAAAGCCATGGAATAA |
Polymorphism | P_ BNL3874 |
Comment | Primer data obtained in 2000 |
Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Map Positions
# | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
1 | HS-46 x MARCABUCAG8US-1-88, RIL (2009) | AD_ch09_At.09 | N/A | 22 | BNL3874-223 | View |
2 | AD-genome wide Reference Map (2009) | AD_ch09_At.09 | N/A | 36 | BNL3874 | View |
3 | TM-1 x 3-79, RIL (2012) | AD_ch09_At.09 | N/A | 106.59 | BNL3874 | View |
4 | Xinluzao-1 x Hai-7124, F2 (2008) | AD_ch09_At.09 | N/A | 17.7 | BNL3874 | View |
5 | DH962 x Jinmian-6, F2 (2009) | AD_ch09_At.09 | N/A | 47 | BNL3874 | View |
6 | DH962 x Jinmian-6, F2 (2009) | AD_ch09_At.09 | N/A | 47 | BNL3874 | View |
7 | DH962 X Ji Mian 5, F2 (2015) | AD_ch09_At.09 | N/A | 51.01 | BNL3874 | View |
8 | DH962 X Ji Mian 5, F2 (2015) | AD_ch09_At.09 | N/A | 51.01 | BNL3874 | View |
9 | TM-1 x 3-79, RIL (2014) | AD_ch09_At.09 | N/A | 35.6 | BNL3874 | View |
10 | DH962 x Ji Mian 5, RIL (2015) | AD_ch09_At.09 | N/A | 16.8 | BNL3874 | View |
11 | Monsanto SSR Bin Map, (2009) | AD_ch09_At.09 | N/A | 121 | BNL3874 | View |
12 | TM-1 x 3-79, RIL (2012.v3) | AD_ch09_At.09 | N/A | 35.6 | BNL3874 | View |
Sequence
>BNL3874 ID=BNL3874; Name=BNL3874; organism=Gossypium hirsutum; type=genetic_marker; length=227bp CATGTTCTAATCATATATATATGTATATATATGTGTGTGTGTGTGTGTGT GTATATATTATAGCAATACAAGGCTAAAAAAAAGGAAATAATAGTCGTGT TGACATTATAGTTTTTTTTTGACACACGACACTCTCCATTAGAAGTACTA ATTTACATATTGGATTAATTACTCTTTTACTCCTTGCCTTTTAATTTTTT AAGTTATTCCATGGCTTTTGTTATTTT
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