BNL3655, BNL3655 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL3655
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL3655_orig
Source Typegenomic
Repeat Motif(CTT)4+(CT)17+(CA)+(CT)6
PCR ConditionAnnealing temperature: 55
Primer 1BNL3655_F: ATTTGAGCAAAATTTTCTTTGC
Primer 2BNL3655_R: TTGAGGAAAAATTTAAAAAGATATACG
PolymorphismP_ BNL3655
CommentPrimer data obtained in 2000
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D06chromosomeD06:37903394..37903523 +
Dt_chr10chromosomeDt_chr10:54823049..54823186 +
At_chr11chromosomeAt_chr11:36690746..36690875 -
D06chromosomeD06:35529664..35529795 +
Ghir_D06chromosomeGhir_D06:37826997..37827128 +
D06chromosomeD06:37380541..37380672 +
D06chromosomeD06:37288666..37288797 +
D06chromosomeD06:34591956..34592091 +
scaffold17613supercontigscaffold17613:31048..31131 +
scaffold17613supercontigscaffold17613:29606..29689 +
scaffold7378supercontigscaffold7378:79499..79611 -
Gbar_D06chromosomeGbar_D06:37081827..37081939 -
CM017628.1chromosomeCM017628.1:35826322..35826434 +
CM017641.1chromosomeCM017641.1:70202421..70202586 +
D06chromosomeD06:37644918..37645049 +
Chr06chromosomeChr06:74800571..74800758 -
Chr10chromosomeBNL3655:1..432 .
Chr10:34877503..34877914 +
scaffold320supercontigBNL3655:1..432 .
scaffold320:466577..466988 +
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL3655_origBNL3655_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Deltapine-61 x Texas-701, F2 (2007)AD_ch25_Dt.06N/A28.2BNL3655-99View
2AD-genome wide Reference Map (2009)AD_ch25_Dt.06N/A119BNL3655View
3Xinluzao-1 x Hai-7124, F2 (2008)AD_ch25_Dt.06N/A112.2BNL3655View
4Yumian-1 x T586, F2:7 (2008)AD_ch25_Dt.06N/A11.6BNL3655View
5Emian-22 x 3-79, BC1 (2011)AD_ch25_Dt.06N/A88.65BNL3655View
6Yumian-1 x T586, RIL (2006)AD_ch25_Dt.06N/A20.3BNL3655View
7DH962 x Jinmian-6, F2 (2009)AD_ch25_Dt.06N/A45.7BNL3655View
8DH962 x Jinmian-6, F2 (2009)AD_ch25_Dt.06N/A45.7BNL3655View
9Yumian-1 x T586, RIL (2015)AD_ch25_Dt.06N/A51.1BNL3655View
10DH962 X Ji Mian 5, F2 (2015)AD_ch25_Dt.06N/A68.2BNL3655View
11DH962 x Ji Mian 5, RIL (2015)AD_ch25_Dt.06N/A38.2BNL3655View
12SG 747 x Giza 75, BIL (2013)AD_ch25_Dt.06N/A0BNL3655View
13CCRI-36 x G2005, RIL (2016)AD_ch25_Dt.06N/A57.53BNL3655View
14Monsanto SSR Bin Map, (2009)AD_ch25_Dt.06N/A41BNL3655View
15Handan-208 x Pima-90, F2:3 (2007)AD_ch25_Dt.06N/A271BNL3655*View
16Yumian-1 x T586, RIL (2009)AD_ch25_Dt.06N/A20.4BNL3655/100t(C25)View
17PD 94042 x (AD)4-08, F2 (2016)AD_ch25_Dt.06N/A96.5BNL3655View
18MGG-293-793, MAGIC (2018)AD_ch25_Dt.06N/A65.8BNL3655View
Sequence
>BNL3655 ID=BNL3655; Name=BNL3655; organism=Gossypium hirsutum; type=genetic_marker; length=132bp
ATTTGAGCAAAATTTTCTTTGCTTCTTCTTCTTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCACTCTCTCTCTCTGTTTCATGAATCAAATGGA
GAACACGTATATCTTTTTAAATTTTTCCTCAA