|
|
Marker Overview
| Name | BNL3650 |
|---|
| Genbank ID | N/A |
|---|
| Type | SSR |
|---|
| Species | Gossypium hirsutum |
|---|
| Germplasm | Deltapine 90 |
|---|
| Source Sequence | BNL3650_orig
|
|---|
| Source Type | genomic |
|---|
| Repeat Motif | (TC)15+(TA)6 |
|---|
| PCR Condition | Annealing temperature: 55 |
|---|
| Primer 1 | BNL3650_F: TCGATTTCCTTATTTGATTTCTG |
|---|
| Primer 2 | BNL3650_R: AATTTGTCCAGATTCATTCTTCA |
|---|
| Polymorphism | P_ BNL3650 |
|---|
| Comment | Primer data obtained in 2000 |
|---|
Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Map Positions
| # | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
|---|
| 1 | (SM3 x SM12) x (X4133 x 8891), 4WC (2008) | AD_ch06_At.06 | N/A | 52.6 | BNL3650 | View |
| 2 | 7235 x TM-1, RIL (2007) | AD_ch06_At.06 | N/A | 0 | BNL3650 | View |
| 3 | CCRI-36 x Hai-7124, F2 (2007) | AD_ch06_At.06 | N/A | 65.6 | BNL3650 | View |
| 4 | Emian-22 x 3-79, BC1 (2011) | AD_ch06_At.06 | N/A | 105.22 | BNL3650 | View |
| 5 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch06_At.06 | N/A | 145.8 | BNL3650 | View |
| 6 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch06_At.06 | N/A | 71.95 | BNL3650 | View |
| 7 | AD-genome wide Reference Map (2009) | AD_ch06_At.06 | N/A | 148 | BNL3650 | View |
| 8 | TM-1 x 3-79, RIL (2006) | AD_ch06_At.06 | N/A | 39.8 | BNL3650 | View |
| 9 | TM-1 x 3-79, RIL (2012) | AD_ch06_At.06 | N/A | 43.66 | BNL3650 | View |
| 10 | Xinluzao-1 x Hai-7124, F2 (2008) | AD_ch06_At.06 | N/A | 32.3 | BNL3650 | View |
| 11 | Yumian-1 x T586, F2:3 (2005) | AD_ch06_At.06 | N/A | 0 | BNL3650 | View |
| 12 | Yumian-1 x T586, F2:7 (2008) | AD_ch06_At.06 | N/A | 0 | BNL3650 | View |
| 13 | 7235 x TM-1, F2:3 (2005) | AD_ch06_At.06 | N/A | 0 | BNL3650 | View |
| 14 | Yumian-1 x T586, RIL (2006) | AD_ch06_At.06 | N/A | 27.1 | BNL3650 | View |
| 15 | Yumian-1 x T586, RIL (2015) | AD_ch06_At.06 | N/A | 112.5 | BNL3650 | View |
| 16 | Yumian-1 x 7235, RIL (2015) | AD_ch06_At.06 | N/A | 19.8 | BNL3650 | View |
| 17 | TM-1 x 3-79, RIL (2014) | AD_ch06_At.06 | N/A | 43.7 | BNL3650 | View |
| 18 | TM-1 x (TX-0256 + TX-1046), CSIL (2016) | AD_ch06_At.06 | N/A | 63.2 | BNL3650 | View |
| 19 | GX1135 x GX100-2, RIL (2015) | AD_ch06_At.06 | N/A | 31.3 | BNL3650 | View |
| 20 | GX1135 x GX100-2, RIL (2016) | AD_ch06_At.06 | N/A | 77.1 | BNL3650 | View |
| 21 | GX1135 x VGX100-2, RIL (2016) | AD_ch06_At.06 | N/A | 36.5 | BNL3650 | View |
| 22 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch06_At.06 | N/A | 58.7 | BNL3650 | View |
| 23 | SG 747 x Giza 75, BIL (2013) | AD_ch06_At.06 | N/A | 32.2 | BNL3650 | View |
| 24 | Monsanto SSR Bin Map, (2009) | AD_ch06_At.06 | N/A | 61 | BNL3650 | View |
| 25 | TM-1 x Hai-7124, BC1 (2008) | AD_ch06_At.06 | N/A | 42.49 | BNL3650-360 | View |
| 26 | Vsg x (TM-1 x Hai-7124), DH (2005) | AD_ch06_At.06 | N/A | 14.8 | BNL3650-360 | View |
| 27 | TM-1 x Hai-7124, BC1 (2007) | AD_ch06_At.06 | N/A | 114.9 | BNL3650-360 | View |
| 28 | TM-1 x Hai-7124, BC1 (2012) | AD_ch06_At.06 | N/A | 42.4 | BNL3650-360 | View |
| 29 | Yumian-1 x T586, RIL (2009) | AD_ch06_At.06 | N/A | 23.7 | BNL3650/350t(C6) | View |
| 30 | Yumian-1 x T586, F2:3 (2005.v0) | AD_ch06_At.06 | N/A | 0 | BNL3650(C6) | View |
| 31 | (SM3 x SM12) x (X4133 x 8891), 4WC (2008) | AD_ch06_At.06 | N/A | 52.6 | BNL3650 | View |
| 32 | TM-1 x 3-79, RIL (2012.v3) | AD_ch06_At.06 | N/A | 43.66 | BNL3650 | View |
Sequence
>BNL3650 ID=BNL3650; Name=BNL3650; organism=Gossypium hirsutum; type=genetic_marker; length=236bp
TCGATTTCCTTATTTGATTTCTGGTTTTTCAAGATCTTCTTTATTTAATT
GTTTTTCAGATTTGGTGTTTTTACATAAATCTAAACATTTGTTTATATTA
TTTTTTATTTAATATAAATATTTATATTTATATTAAATAAAAAATATAAA
ATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATATATATAAAATAAT
ATATATTTTCAAATGAAGAATGAATCTGGACAAATT
|
