BNL3650, BNL3650 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL3650
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL3650_orig
Source Typegenomic
Repeat Motif(TC)15+(TA)6
PCR ConditionAnnealing temperature: 55
Primer 1BNL3650_F: TCGATTTCCTTATTTGATTTCTG
Primer 2BNL3650_R: AATTTGTCCAGATTCATTCTTCA
PolymorphismP_ BNL3650
CommentPrimer data obtained in 2000
Germplasm
Stock NameType
Deltapine 90obsolete_cultivar
Relationships

This genetic_marker is adjacent to the following primer feature(s):

Feature NameUnique NameSpeciesType
BNL3650_FBNL3650_FGossypium hirsutumprimer
BNL3650_RBNL3650_RGossypium hirsutumprimer


This genetic_marker is adjacent to the following QTL feature(s):

Feature NameUnique NameSpeciesType
seed oil contentqSOC.GG-RIL.16_ch06.hd12-ril.1Gossypium hirsutumQTL
seed indexqSI.GG-RIL.16_ch06.xy12-bc.1Gossypium hirsutumQTL
seed indexqSI.GVG-RIL_ch06.cz12-bcGossypium hirsutumQTL


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
BNL3650BNL3650Gossypium hirsutummarker_locus
BNL3650-360BNL3650-360Gossypium hirsutummarker_locus
BNL3650/350t(C6)BNL3650/350t(C6)Gossypium hirsutummarker_locus
BNL3650(C6)BNL3650(C6)Gossypium hirsutummarker_locus
BNL3650BNL3650-52.6Gossypium hirsutummarker_locus
BNL3650BNL3650-43.66Gossypium hirsutummarker_locus


The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL3650_origBNL3650_origGossypium hirsutumsequence_feature


Sequence
>BNL3650 ID=BNL3650|Name=BNL3650|organism=Gossypium hirsutum|type=genetic_marker|length=236bp
TCGATTTCCTTATTTGATTTCTGGTTTTTCAAGATCTTCTTTATTTAATT
GTTTTTCAGATTTGGTGTTTTTACATAAATCTAAACATTTGTTTATATTA
TTTTTTATTTAATATAAATATTTATATTTATATTAAATAAAAAATATAAA
ATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATATATATAAAATAAT
ATATATTTTCAAATGAAGAATGAATCTGGACAAATT
Map Positions
#Map NameLinkage GroupBinChromosomePositionLocus
1(Simian-3 x Sumian-12) x (Zhong-4133 x 8891), 4WC (2008) part(Simian-3 x Sumian-12) x (Zhong-4133 x 8891), 4WC (2008) part.SSZ8-4WC_A06-1N/AAD_chr.0652.6BNL3650
27235 x TM-1, RIL (2007)7235 x TM-1, RIL (2007).7T-RIL_A06N/AAD_chr.060BNL3650
3CCRI-36 x Hai-7124, F2 (2007)CCRI-36 x Hai-7124, F2 (2007).CH-F2_chr06N/AAD_chr.0665.6BNL3650
4Emian-22 x 3-79, BC1 (2011)Emian-22 x 3-79, BC1 (2011).E3-BC1_chr06N/AAD_chr.06105.22BNL3650
5Guazuncho-2 x VH8-4602, BC1 (2005)Guazuncho-2 x VH8-4602, BC1 (2005).GV-BC1_chr06N/AAD_chr.06145.8BNL3650
6Guazuncho-2 x VH8-4602, consensus (2009)Guazuncho-2 x VH8-4602, consensus (2009).GV-cons_c06N/AAD_chr.0671.95BNL3650
7Monsanto SSR Bin Map, (2009)Monsanto SSR Bin Map, (2009).BIN-SSR_chr06N/AAD_chr.0670BNL3650
8AD-genome wide Reference Map (2009)AD-genome wide Reference Map (2009).Ref-chr06N/AAD_chr.06148BNL3650
9TM-1 x 3-79, RIL (2006)TM-1 x 3-79, RIL (2006).T3-RIL_chr.06N/AAD_chr.0639.8BNL3650
10TM-1 x 3-79, RIL (2012)TM-1 x 3-79, RIL (2012).T3-RIL.12_c06N/AAD_chr.0643.66BNL3650
11Xinluzao-1 x Hai-7124, F2 (2008)Xinluzao-1 x Hai-7124, F2 (2008).XH-F2_lg11/chr06N/AAD_chr.0632.3BNL3650
12Yumian-1 x T586, F2:3 (2005)Yumian-1 x T586, F2:3 (2005).YT-F2:3_chr06.1N/AAD_chr.060BNL3650
13Yumian-1 x T586, F2:7 (2008)Yumian-1 x T586, RIL (2008).YT-RIL_chr06.1N/AAD_chr.060BNL3650
147235 x TM-1, F2:3 (2005)7T-F2:3_chr06N/AAD_chr.060BNL3650
15Yumian-1 x T586, RIL (2006)YT-RIL_chr06-3N/AAD_chr.0627.1BNL3650
16Yumian-1 x T586, RIL (2015)YT-RIL.15_chr06N/AAD_chr.06112.5BNL3650
17Yumian-1 x 7235, RIL (2015)Y7-RIL_chr06N/AAD_chr.0619.8BNL3650
18TM-1 x 3-79, RIL (2014)T3-RIL.14_chr06N/AAD_chr.0643.7BNL3650
19TM-1 x (TX-0256 + TX-1046), CSIL (2016)TTT-CSIL_chr06N/AAD_chr.0663.2BNL3650
20GX1135 x GX100-2, RIL (2015)GG-RIL.15_chr06N/AAD_chr.0631.3BNL3650
21GX1135 x GX100-2, RIL (2016)GG-RIL.16_chr06N/AAD_chr.0677.1BNL3650
22GX1135 x VGX100-2, RIL (2016)GVG-RIL_chr06N/AAD_chr.0636.5BNL3650
23CCRI 12-4 x (AD)5-7, F2 (2015)CAD5-F2_chr06N/AAt.0658.7BNL3650
24SG 747 x Giza 75, BIL (2013)SG-BIL_chr06N/AAD_chr.0632.2BNL3650
25TM-1 x Hai-7124, BC1 (2008)TM-1 x Hai-7124, BC1 (2008).TH-BC1.08_chr06/A6N/AAD_chr.0642.49BNL3650-360
26Vsg x (TM-1 x Hai-7124), DH (2005)Vsg x (TM-1 x Hai-7124), DH (2005).VTH-DH.05_chr06.3N/AAD_chr.0614.8BNL3650-360
27TM-1 x Hai-7124, BC1 (2007)TM-1 x Hai-7124, BC1 (2007).TH-BC1_chr06N/AAD_chr.06114.9BNL3650-360
28Yumian-1 x T586, RIL (2009)YT-RIL_chr06-2N/AAD_chr.0623.7BNL3650/350t(C6)
29Yumian-1 x T586, F2:3 (2005.v0)YT-F2:3_chr06-1N/AAD_chr.060BNL3650(C6)
30(Simian-3 x Sumian-12) x (Zhong-4133 x 8891), 4WC (2008) part(Simian-3 x Sumian-12) x (Zhong-4133 x 8891), 4WC (2008) part.SSZ8-4WC_A06-1N/AAD_chr.0652.6BNL3650
31TM-1 x 3-79, RIL (2012.v3)T3-RIL.12v3_chr.06N/AAD_chr.0643.66BNL3650