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Marker Overview
Name | BNL3627 |
Genbank ID | N/A |
Type | SSR |
Species | Gossypium hirsutum |
Germplasm | Deltapine 90 |
Source Sequence | BNL3627_orig
|
Source Type | genomic |
Repeat Motif | (TC)17 |
PCR Condition | Annealing temperature: 55 |
Primer 1 | BNL3627_F: TATGGGCCTGTCCACCTAAG |
Primer 2 | BNL3627_R: CAAAGCAACATGCACACACA |
Polymorphism | P_ BNL3627 |
Comment | Primer data obtained in 2000 |
Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Image
File Name | Legend |
45_FISH_GEN-178-1117_fig2.jpg | BAC clones and their corresponding genetic markers of the 22 probes according to FISH signal patterns in Figure 1. [Image from Wang et al., 2008, GEN-178-1117] |
48_FISH_TAG-115-675.jpg | Twenty-six individual cotton mitotic chromosomes with FISH signals derived from the chromosome-speciWc BACs, and comparisons of linkage and FISH maps. [Image from Wang 2007, TAG-115-675] |
Map Positions
# | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
1 | 3-79 x NM24016, RIL (2008) | AD_ch03_At.03 | N/A | 0 | BNL3627 | View |
2 | Guazuncho-2 x VH8-4602, BC2 (2005) | AD_ch24_Dt.08 | N/A | 66.7 | BNL3627 | View |
3 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch24_Dt.08 | N/A | 99.34 | BNL3627 | View |
4 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch03_At.03 | N/A | 37.25 | BNL3627 | View |
5 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch08_At.08 | N/A | 109.66 | BNL3627 | View |
6 | Guazuncho-2 x VH8-4602, RIL (2009) | AD_ch08_At.08 | N/A | 36.06 | BNL3627 | View |
7 | Guazuncho-2 x VH8-4602, RIL (2009) | AD_ch24_Dt.08 | N/A | 82.32 | BNL3627 | View |
8 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch08_At.08 | N/A | 164.9 | BNL3627 | View |
9 | Palmeri x K-101, F2 (2007) | AD_ch08_At.08 | N/A | 128.3 | BNL3627 | View |
10 | AD-genome wide Reference Map (2009) | AD_ch08_At.08 | N/A | 200 | BNL3627 | View |
11 | TM-1 x 3-79, RIL (2006) | AD_ch08_At.08 | N/A | 27.9 | BNL3627 | View |
12 | TM-1 x 3-79, RIL (2012) | AD_ch08_At.08 | N/A | 36.72 | BNL3627 | View |
13 | Xinluzao-1 x Hai-7124, F2 (2008) | AD_ch08_At.08 | N/A | 16 | BNL3627 | View |
14 | Emian-22 x 3-79, BC1 (2011) | AD_ch08_At.08 | N/A | 126.71 | BNL3627 | View |
15 | AD-genome wide Reference Map (2009) | AD_ch24_Dt.08 | N/A | 43 | BNL3627 | View |
16 | AD-genome wide Reference Map (2009) | AD_ch03_At.03 | N/A | 109 | BNL3627 | View |
17 | TM-1 x 3-79, RIL (2014) | AD_ch08_At.08 | N/A | 46.3 | BNL3627 | View |
18 | TM-1 x (TX-0256 + TX-1046), CSIL (2016) | AD_ch08_At.08 | N/A | 96.9 | BNL3627 | View |
19 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch08_At.08 | N/A | 75.4 | BNL3627 | View |
20 | SG 747 x Giza 75, BIL (2013) | AD_ch08_At.08 | N/A | 45 | BNL3627 | View |
21 | CCRI-36 x Hai-7124, F2 (2007) | AD_ch08_At.08 | N/A | 148.9 | BNL3627a | View |
22 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch24_Dt.08 | N/A | 136.5 | BNL3627a | View |
23 | Monsanto SSR Bin Map, (2009) | AD_ch08_At.08 | N/A | 141 | BNL3627a | View |
24 | CCRI-36 x Hai-7124, F2 (2007) | AD_ch24_Dt.08 | N/A | 68.6 | BNL3627b | View |
25 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch03_At.03 | N/A | 41 | BNL3627b | View |
26 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch26_Dt.12 | N/A | 22.5 | BNL3627b | View |
27 | Monsanto SSR Bin Map, (2009) | AD_ch24_Dt.08 | N/A | 101 | BNL3627b | View |
28 | TM-1 x Hai-7124, BC1 (2007) | AD_ch08_At.08 | N/A | 45.3 | BNL3627-180 | View |
29 | TM-1 x Hai-7124, BC1 (2008) | AD_ch08_At.08 | N/A | 83.72 | BNL3627-180 | View |
30 | Vsg x (TM-1 x Hai-7124), DH (2005) | AD_ch08_At.08 | N/A | 11 | BNL3627-180 | View |
31 | TM-1 x Hai-7124, BC1 (2012) | AD_ch08_At.08 | N/A | 49.6 | BNL3627-180 | View |
32 | TM-1 x Hai-7124, BC1S1 (2007) | AD_ch08_At.08 | N/A | 14.6 | BNL3627_180 | View |
33 | TM-1 x 3-79, RIL (2012.v3) | AD_ch08_At.08 | N/A | 46.34 | BNL3627 | View |
34 | PD 94042 x (AD)4-08, F2 (2016) | AD_ch08_At.08 | N/A | 101.3 | BNL3627b | View |
35 | PD 94042 x (AD)4-08, F2 (2016) | AD_ch24_Dt.08 | N/A | 5.8 | BNL3627a | View |
Sequence
>BNL3627 ID=BNL3627; Name=BNL3627; organism=Gossypium hirsutum; type=genetic_marker; length=183bp TATGGGCCTGTCCACCTAAGAAAGGAGAAGATTATATCTTCTATTTCCAC CCAGAGATTCAGAAAATACCGAAGTCTGATAAGCTGAGGCAGTGGTCTCT CTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTGTCACATATCTCTTATAC ATGCATGTCTTTATGTGTGTGCATGTTGCTTTG
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