BNL3623, BNL3623 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL3623
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL3623_orig
Source Typegenomic
Repeat Motif(GA)13+(G)+(GA)20
PCR ConditionAnnealing temperature: 55
Primer 1BNL3623_F: TTAATAGAGGGACCAAAAGTGATAT
Primer 2BNL3623_R: TTAGCGTTAATATTGTATGTTCAACTC
PolymorphismP_ BNL3623
CommentPrimer data obtained in 2000
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A02chromosomeA02:6834530..6834871 +
scaffold3551_A13supercontigscaffold3551_A13:639188..640298 -
Ghir_A13chromosomeGhir_A13:41458667..41459014 -
A13chromosomeA13:41400655..41400997 -
A13chromosomeA13:44309158..44309398 -
CM017648.1chromosomeCM017648.1:45246124..45246335 -
A13chromosomeA13:43795694..43796036 -
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL3623_origBNL3623_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Guazuncho-2 x VH8-4602, consensus (2009)AD_ch13_At.13N/A90.92BNL3623View
2Guazuncho-2 x VH8-4602, RIL (2009)AD_ch13_At.13N/A39.15BNL3623View
3PD 94042 x (AD)4-08, F2 (2016)AD_ch13_At.13N/A34.9BNL3623View
Sequence
>BNL3623 ID=BNL3623; Name=BNL3623; organism=Gossypium hirsutum; type=genetic_marker; length=345bp
TTAATAGAGGGACCAAAAGTGATATTTGCCTAAATTTTATAAAATGCAAA
AAAAAAGAGAAAAATTGAACATGTGTCAAATAGAAAGATTAGAAGTGATA
CTTGACTTATAACGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGGAGAGGGGGAGAAGGAG
AGAGGGGGAGAGAGAGAAAGGGAAGGAGGGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGGGGAGTTGAACATACAATATTAACGCTAA