BNL3590, BNL3590 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL3590
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL3590_orig
Source Typegenomic
Repeat Motif(CA)20
PCR ConditionAnnealing temperature: 55
Primer 1BNL3590_F: TCTTCCCTCTCTTTCTCTTTCG
Primer 2BNL3590_R: ACACGGAAGACCAACCAAGT
PolymorphismP_ BNL3590
CommentPrimer data obtained in 2000
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D03chromosomeD03:32782002..32782191 +
A02chromosomeA02:43720721..43720902 -
CM018217.1chromosomeCM018217.1:33536958..33537133 +
CM018203.1chromosomeCM018203.1:42174788..42174963 -
D5_02chromosomeD5_02:27604258..27604419 +
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:84077070..84077235 +
D10_02chromosomeD10_02:32220387..32220552 +
CM016615.1chromosomeCM016615.1:74412676..74412843 +
Dt_chr3chromosomeDt_chr3:38672635..38672808 -
D03chromosomeD03:26940735..26940924 +
A02chromosomeA02:40971023..40971204 -
Ghir_D03chromosomeGhir_D03:32934297..32934486 +
D03chromosomeD03:34563338..34563527 +
A02chromosomeA02:43134826..43135007 -
D03chromosomeD03:33860846..33861019 +
A02chromosomeA02:43453217..43453398 -
D03chromosomeD03:33280492..33280681 +
A02chromosomeA02:42906378..42906561 -
Dt03chromosomeDt03:28482782..28482957 +
At02chromosomeAt02:44229420..44229595 -
scaffold2657supercontigscaffold2657:107468..107643 +
scaffold4364supercontigscaffold4364:32550..32725 -
Gbar_D03chromosomeGbar_D03:31950975..31951152 +
Gbar_A02chromosomeGbar_A02:42714004..42714179 -
D03chromosomeD03:34555284..34555461 +
A02chromosomeA02:43160491..43160666 -
CM017625.1chromosomeCM017625.1:32926531..32926704 +
CM017611.1chromosomeCM017611.1:42434659..42434832 -
CM017651.1chromosomeCM017651.1:36926719..36926890 +
CM017637.1chromosomeCM017637.1:45023598..45023775 -
CM017703.1chromosomeCM017703.1:34354458..34354637 +
CM017689.1chromosomeCM017689.1:42947707..42947882 -
D03chromosomeD03:34935664..34935853 +
A02chromosomeA02:44341534..44341715 -
Chr02chromosomeChr02:27799017..27799182 -
Chr03chromosomeChr03:80726343..80726508 +
Chr02chromosomeChr02:29690425..29690586 +
Chr03chromosomeChr03:31325855..31326040 +
chr03chromosomechr03:14893999..14894310 -
Chr_03chromosomeChr_03:11958752..11959050 -
Chr03chromosomeChr03:33034368..33034529 +
Chr03chromosomeChr03:10728449..10728626 -
Chr03chromosomeChr03:13073590..13073859 -
E02chromosomeE02:59003772..59003945 +
Chr02chromosomeChr02:48355283..48355454 +
Chr03chromosomeBNL3590:1..374 .
Chr03:18634806..18635151 -
Chr3chromosomeBNL3590:1..374 .
Chr3:10108189..10108534 -
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL3590_origBNL3590_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
13-79 x NM24016, RIL (2008)AD_ch02_At.02N/A0BNL3590aView
2CCRI-36 x Hai-7124, F2 (2007)AD_ch17_Dt.03N/A72.6BNL3590aView
3Guazuncho-2 x VH8-4602, BC2 (2005)AD_ch02_At.02N/A27.8BNL3590aView
4TM-1 x 3-79, RIL (2012)AD_ch02_At.02N/A60.68BNL3590aView
5TM-1 x 3-79, RIL (2014)AD_ch02_At.02N/A61.5BNL3590aView
6SG 747 x Giza 75, BIL (2013)AD_ch02_At.02N/A60.6BNL3590aView
7Monsanto SSR Bin Map, (2009)AD_ch02_At.02N/A61BNL3590aView
83-79 x NM24016, RIL (2008)AD_ch02_At.02N/A10.5BNL3590bView
9CCRI-36 x Hai-7124, F2 (2007)AD_ch02_At.02N/A45.3BNL3590bView
10Guazuncho-2 x VH8-4602, BC2 (2005)AD_ch17_Dt.03N/A79BNL3590bView
11Handan-208 x Pima-90, F2:3 (2007)AD_ch17_Dt.03N/A123.6BNL3590bView
12TM-1 x 3-79, RIL (2012)AD_ch17_Dt.03N/A71.21BNL3590bView
13TM-1 x 3-79, RIL (2014)AD_ch17_Dt.03N/A53.7BNL3590bView
14SG 747 x Giza 75, BIL (2013)AD_ch17_Dt.03N/A28.4BNL3590bView
157235 x TM-1, RIL (2007)AD_ch02_At.02N/A0BNL3590View
16Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch02_At.02N/A57.4BNL3590View
17Guazuncho-2 x VH8-4602, consensus (2009)AD_ch02_At.02N/A36.31BNL3590View
18Handan-208 x Pima-90, F2:3 (2007)AD_ch02_At.02N/A15BNL3590View
19AD-genome wide Reference Map (2009)AD_ch17_Dt.03N/A115BNL3590View
20Xinluzao-1 x Hai-7124, F2 (2008)AD_ch02_At.02N/A142.1BNL3590View
21Acala-44 x Pima S-7, F2 (2004)AD_chUN/A120.2BNL3590View
22Emian-22 x 3-79, BC1 (2011)AD_ch02_At.02N/A76.83BNL3590View
23AD-genome wide Reference Map (2009)AD_ch02_At.02N/A125BNL3590View
24(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch02_At.02N/A72.6BNL3590View
257235 x TM-1, F2:3 (2005)AD_ch02_At.02N/A0BNL3590View
26Yumian-1 x 7235, RIL (2015)AD_ch17_Dt.03N/A41.8BNL3590View
27TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch17_Dt.03N/A47.5BNL3590View
28W10 x TM-1, F2:3 (2015)AD_ch09_At.09N/A5.3BNL3590View
29CCRI-35 x Yumian-1, RIL (2015)AD_ch02_At.02N/A62.2BNL3590View
30LMY22 x LY343, RIL (2016)chr.2N/A59.3BNL3590View
31TM-1 x Hai-7124, BC1 (2007)AD_ch02_At.02N/A64BNL3590-180View
32TM-1 x Hai-7124, BC1 (2008)AD_ch02_At.02N/A50.68BNL3590-180View
33Vsg x (TM-1 x Hai-7124), DH (2005)AD_ch02_At.02N/A54.9BNL3590-180View
34TM-1 x Hai-7124, BC1 (2012)AD_ch02_At.02N/A49.6BNL3590-180View
35TM-1 x Hai-7124, BC1 (2007)AD_ch17_Dt.03N/A59.7BNL3590-265View
36TM-1 x Hai-7124, BC1 (2008)AD_ch17_Dt.03N/A17.77BNL3590-265View
37Vsg x (TM-1 x Hai-7124), DH (2005)AD_ch17_Dt.03N/A35.3BNL3590-265View
38TM-1 x Hai-7124, BC1 (2012)AD_ch17_Dt.03N/A59.7BNL3590-265View
39TM-1 x Hai-7124, BC1 (2007)AD_ch17_Dt.03N/A85.5BNL3590-215View
40TM-1 x Hai-7124, BC1 (2008)AD_ch17_Dt.03N/A4.8BNL3590-215View
41Vsg x (TM-1 x Hai-7124), DH (2005)AD_ch17_Dt.03N/A50.3BNL3590-215View
42TM-1 x Hai-7124, BC1 (2012)AD_ch17_Dt.03N/A93.3BNL3590-215View
43Vsg x (TM-1 x Hai-7124), DH (2005)AD_ch02_At.02N/A73.8BNL3590-185View
44CCRI-35 x Yumian-1, RIL (2017)AD_ch02_At.02N/A53.25BNL3590View
45TM-1 x 3-79, RIL (2012.v3)AD_ch02_At.02N/A61.48BNL3590aView
46TM-1 x 3-79, RIL (2012.v3)AD_ch17_Dt.03N/A53.73BNL3590bView
47PD 94042 x (AD)4-08, F2 (2016)AD_ch17_Dt.03N/A114.8BNL3590View
Sequence
>BNL3590 ID=BNL3590; Name=BNL3590; organism=Gossypium hirsutum; type=genetic_marker; length=190bp
TCTTCCCTCTCTTTCTCTTTCGTATCTGTCACCTCTTCCATGCTCTTTGT
TACTGAAAAGGGTATATTCTGAAACCATTAAACAAGAAAAATAGCTTATA
TCTATATCCACACACACACACACACACACACACACACACACACACACATA
TATATATATAACTCACCTTGACTTGGTTGGTCTTCCGTGT