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Marker Overview
Name | BNL3590 |
Genbank ID | N/A |
Type | SSR |
Species | Gossypium hirsutum |
Germplasm | Deltapine 90 |
Source Sequence | BNL3590_orig
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Source Type | genomic |
Repeat Motif | (CA)20 |
PCR Condition | Annealing temperature: 55 |
Primer 1 | BNL3590_F: TCTTCCCTCTCTTTCTCTTTCG |
Primer 2 | BNL3590_R: ACACGGAAGACCAACCAAGT |
Polymorphism | P_ BNL3590 |
Comment | Primer data obtained in 2000 |
Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Map Positions
# | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
1 | 3-79 x NM24016, RIL (2008) | AD_ch02_At.02 | N/A | 0 | BNL3590a | View |
2 | CCRI-36 x Hai-7124, F2 (2007) | AD_ch17_Dt.03 | N/A | 72.6 | BNL3590a | View |
3 | Guazuncho-2 x VH8-4602, BC2 (2005) | AD_ch02_At.02 | N/A | 27.8 | BNL3590a | View |
4 | TM-1 x 3-79, RIL (2012) | AD_ch02_At.02 | N/A | 60.68 | BNL3590a | View |
5 | TM-1 x 3-79, RIL (2014) | AD_ch02_At.02 | N/A | 61.5 | BNL3590a | View |
6 | SG 747 x Giza 75, BIL (2013) | AD_ch02_At.02 | N/A | 60.6 | BNL3590a | View |
7 | Monsanto SSR Bin Map, (2009) | AD_ch02_At.02 | N/A | 61 | BNL3590a | View |
8 | 3-79 x NM24016, RIL (2008) | AD_ch02_At.02 | N/A | 10.5 | BNL3590b | View |
9 | CCRI-36 x Hai-7124, F2 (2007) | AD_ch02_At.02 | N/A | 45.3 | BNL3590b | View |
10 | Guazuncho-2 x VH8-4602, BC2 (2005) | AD_ch17_Dt.03 | N/A | 79 | BNL3590b | View |
11 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch17_Dt.03 | N/A | 123.6 | BNL3590b | View |
12 | TM-1 x 3-79, RIL (2012) | AD_ch17_Dt.03 | N/A | 71.21 | BNL3590b | View |
13 | TM-1 x 3-79, RIL (2014) | AD_ch17_Dt.03 | N/A | 53.7 | BNL3590b | View |
14 | SG 747 x Giza 75, BIL (2013) | AD_ch17_Dt.03 | N/A | 28.4 | BNL3590b | View |
15 | 7235 x TM-1, RIL (2007) | AD_ch02_At.02 | N/A | 0 | BNL3590 | View |
16 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch02_At.02 | N/A | 57.4 | BNL3590 | View |
17 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch02_At.02 | N/A | 36.31 | BNL3590 | View |
18 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch02_At.02 | N/A | 15 | BNL3590 | View |
19 | AD-genome wide Reference Map (2009) | AD_ch17_Dt.03 | N/A | 115 | BNL3590 | View |
20 | Xinluzao-1 x Hai-7124, F2 (2008) | AD_ch02_At.02 | N/A | 142.1 | BNL3590 | View |
21 | Acala-44 x Pima S-7, F2 (2004) | AD_chU | N/A | 120.2 | BNL3590 | View |
22 | Emian-22 x 3-79, BC1 (2011) | AD_ch02_At.02 | N/A | 76.83 | BNL3590 | View |
23 | AD-genome wide Reference Map (2009) | AD_ch02_At.02 | N/A | 125 | BNL3590 | View |
24 | (YM1 x CCRI35) x (YM1 x 7235), 4WC (2012) | AD_ch02_At.02 | N/A | 72.6 | BNL3590 | View |
25 | 7235 x TM-1, F2:3 (2005) | AD_ch02_At.02 | N/A | 0 | BNL3590 | View |
26 | Yumian-1 x 7235, RIL (2015) | AD_ch17_Dt.03 | N/A | 41.8 | BNL3590 | View |
27 | TM-1 x (TX-0256 + TX-1046), CSIL (2016) | AD_ch17_Dt.03 | N/A | 47.5 | BNL3590 | View |
28 | W10 x TM-1, F2:3 (2015) | AD_ch09_At.09 | N/A | 5.3 | BNL3590 | View |
29 | CCRI-35 x Yumian-1, RIL (2015) | AD_ch02_At.02 | N/A | 62.2 | BNL3590 | View |
30 | LMY22 x LY343, RIL (2016) | chr.2 | N/A | 59.3 | BNL3590 | View |
31 | TM-1 x Hai-7124, BC1 (2007) | AD_ch02_At.02 | N/A | 64 | BNL3590-180 | View |
32 | TM-1 x Hai-7124, BC1 (2008) | AD_ch02_At.02 | N/A | 50.68 | BNL3590-180 | View |
33 | Vsg x (TM-1 x Hai-7124), DH (2005) | AD_ch02_At.02 | N/A | 54.9 | BNL3590-180 | View |
34 | TM-1 x Hai-7124, BC1 (2012) | AD_ch02_At.02 | N/A | 49.6 | BNL3590-180 | View |
35 | TM-1 x Hai-7124, BC1 (2007) | AD_ch17_Dt.03 | N/A | 59.7 | BNL3590-265 | View |
36 | TM-1 x Hai-7124, BC1 (2008) | AD_ch17_Dt.03 | N/A | 17.77 | BNL3590-265 | View |
37 | Vsg x (TM-1 x Hai-7124), DH (2005) | AD_ch17_Dt.03 | N/A | 35.3 | BNL3590-265 | View |
38 | TM-1 x Hai-7124, BC1 (2012) | AD_ch17_Dt.03 | N/A | 59.7 | BNL3590-265 | View |
39 | TM-1 x Hai-7124, BC1 (2007) | AD_ch17_Dt.03 | N/A | 85.5 | BNL3590-215 | View |
40 | TM-1 x Hai-7124, BC1 (2008) | AD_ch17_Dt.03 | N/A | 4.8 | BNL3590-215 | View |
41 | Vsg x (TM-1 x Hai-7124), DH (2005) | AD_ch17_Dt.03 | N/A | 50.3 | BNL3590-215 | View |
42 | TM-1 x Hai-7124, BC1 (2012) | AD_ch17_Dt.03 | N/A | 93.3 | BNL3590-215 | View |
43 | Vsg x (TM-1 x Hai-7124), DH (2005) | AD_ch02_At.02 | N/A | 73.8 | BNL3590-185 | View |
44 | CCRI-35 x Yumian-1, RIL (2017) | AD_ch02_At.02 | N/A | 53.25 | BNL3590 | View |
45 | TM-1 x 3-79, RIL (2012.v3) | AD_ch02_At.02 | N/A | 61.48 | BNL3590a | View |
46 | TM-1 x 3-79, RIL (2012.v3) | AD_ch17_Dt.03 | N/A | 53.73 | BNL3590b | View |
47 | PD 94042 x (AD)4-08, F2 (2016) | AD_ch17_Dt.03 | N/A | 114.8 | BNL3590 | View |
Sequence
>BNL3590 ID=BNL3590; Name=BNL3590; organism=Gossypium hirsutum; type=genetic_marker; length=190bp TCTTCCCTCTCTTTCTCTTTCGTATCTGTCACCTCTTCCATGCTCTTTGT TACTGAAAAGGGTATATTCTGAAACCATTAAACAAGAAAAATAGCTTATA TCTATATCCACACACACACACACACACACACACACACACACACACACATA TATATATATAACTCACCTTGACTTGGTTGGTCTTCCGTGT
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