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Marker Overview
| Name | BNL3580 |
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| Genbank ID | N/A |
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| Type | SSR |
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| Species | Gossypium hirsutum |
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| Germplasm | Deltapine 90 |
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| Source Sequence | BNL3580_orig
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| Source Type | genomic |
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| Repeat Motif | (AC)15 |
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| PCR Condition | Annealing temperature: 55 |
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| Primer 1 | BNL3580_F: CTTGTTTACATTCCCTTCTTTATACC |
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| Primer 2 | BNL3580_R: CAAAGGCGAACTCTTCCAAA |
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| Polymorphism | P_ BNL3580 |
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| Comment | Primer data obtained in 2000 |
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Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Image
| File Name | Legend |
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| 45_FISH_GEN-178-1117_fig2.jpg | BAC clones and their corresponding genetic markers of the 22 probes according to FISH signal patterns in Figure 1. [Image from Wang et al., 2008, GEN-178-1117] |
| 48_FISH_TAG-115-675.jpg | Twenty-six individual cotton mitotic chromosomes with FISH signals derived from the chromosome-speciWc BACs, and comparisons of linkage and FISH maps. [Image from Wang 2007, TAG-115-675] |
Map Positions
| # | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
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| 1 | CCRI-36 x Hai-7124, F2 (2007) | AD_ch01_At.01 | N/A | 113.1 | BNL3580 | View |
| 2 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch01_At.01 | N/A | 196.3 | BNL3580 | View |
| 3 | Guazuncho-2 x VH8-4602, BC2 (2005) | AD_ch01_At.01 | N/A | 108.7 | BNL3580 | View |
| 4 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch01_At.01 | N/A | 107.04 | BNL3580 | View |
| 5 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch01_At.01 | N/A | 37.6 | BNL3580 | View |
| 6 | AD-genome wide Reference Map (2009) | AD_ch01_At.01 | N/A | 173 | BNL3580 | View |
| 7 | TM-1 x 3-79, RIL (2006) | AD_ch15_Dt.01 | N/A | 14.6 | BNL3580 | View |
| 8 | TM-1 x 3-79, RIL (2012) | AD_ch01_At.01 | N/A | 23.15 | BNL3580 | View |
| 9 | Xinluzao-1 x Hai-7124, F2 (2008) | AD_ch01_At.01 | N/A | 66.8 | BNL3580 | View |
| 10 | Emian-22 x 3-79, BC1 (2011) | AD_ch01_At.01 | N/A | 52.22 | BNL3580 | View |
| 11 | AD-genome wide Reference Map (2009) | AD_ch15_Dt.01 | N/A | 129 | BNL3580 | View |
| 12 | TM-1 x 3-79, RIL (2014) | AD_ch01_At.01 | N/A | 121.2 | BNL3580 | View |
| 13 | PD 94042 x (AD)4-08, F2 (2016) | AD_ch01_At.01 | N/A | 0 | BNL3580 | View |
| 14 | Monsanto SSR Bin Map, (2009) | AD_ch01_At.01 | N/A | 101 | BNL3580 | View |
| 15 | JLZM x ZJXSLS, F2 (2008) | A_JZ_A01 | N/A | 103.2 | BNL3580-a | View |
| 16 | TM-1 x Hai-7124, BC1 (2007) | AD_ch01_At.01 | N/A | 45.5 | BNL3580-230 | View |
| 17 | TM-1 x Hai-7124, BC1 (2008) | AD_ch01_At.01 | N/A | 49.03 | BNL3580-230 | View |
| 18 | Vsg x (TM-1 x Hai-7124), DH (2005) | AD_ch01_At.01 | N/A | 117.7 | BNL3580-230 | View |
| 19 | TM-1 x Hai-7124, BC1 (2012) | AD_ch01_At.01 | N/A | 81.4 | BNL3580-230 | View |
| 20 | TM-1 x 3-79, RIL (2012.v3) | AD_ch01_At.01 | N/A | 121.23 | BNL3580 | View |
Sequence
>BNL3580 ID=BNL3580; Name=BNL3580; organism=Gossypium hirsutum; type=genetic_marker; length=217bp
CTTGTTTACATTCCCTTCTTTATACCGTTTCTCTGCAAGAAAAACACACA
CACACACACACACACACACACACAAAAGAAAAAAAAAGTAGGAAAGAAAG
GAAAAGAGGAAAGGTTAATTTATGAAAAAATTAAAGGGAAAAACAAAAGA
AGAAGGAGAAAAAAAAAACGTTTATTTTTTCTTAAAAAATATTATTTTTT
GGAAGAGTTCGCCTTTG
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