BNL3580, BNL3580 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL3580
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL3580_orig
Source Typegenomic
Repeat Motif(AC)15
PCR ConditionAnnealing temperature: 55
Primer 1BNL3580_F: CTTGTTTACATTCCCTTCTTTATACC
Primer 2BNL3580_R: CAAAGGCGAACTCTTCCAAA
PolymorphismP_ BNL3580
CommentPrimer data obtained in 2000
Germplasm
Stock NameType
Deltapine 90obsolete_cultivar
Relationships

This genetic_marker is adjacent to the following primer feature(s):

Feature NameUnique NameSpeciesType
BNL3580_FBNL3580_FGossypium hirsutumprimer
BNL3580_RBNL3580_RGossypium hirsutumprimer


This genetic_marker is adjacent to the following QTL feature(s):

Feature NameUnique NameSpeciesType
fiber lengthqFL.HP-ch1Gossypium spp.QTL
seed indexqSI.HP-ch1Gossypium spp.QTL


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
BNL3580BNL3580Gossypium hirsutummarker_locus
BNL3580-aBNL3580-aGossypium hirsutummarker_locus
BNL3580-230BNL3580-230Gossypium hirsutummarker_locus
BNL3580BNL3580-121.225Gossypium hirsutummarker_locus


The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL3580_origBNL3580_origGossypium hirsutumsequence_feature


Sequence
>BNL3580 ID=BNL3580|Name=BNL3580|organism=Gossypium hirsutum|type=genetic_marker|length=217bp
CTTGTTTACATTCCCTTCTTTATACCGTTTCTCTGCAAGAAAAACACACA
CACACACACACACACACACACACAAAAGAAAAAAAAAGTAGGAAAGAAAG
GAAAAGAGGAAAGGTTAATTTATGAAAAAATTAAAGGGAAAAACAAAAGA
AGAAGGAGAAAAAAAAAACGTTTATTTTTTCTTAAAAAATATTATTTTTT
GGAAGAGTTCGCCTTTG
Map Positions
#Map NameLinkage GroupBinChromosomePositionLocusMapViewer
1CCRI-36 x Hai-7124, F2 (2007)CCRI-36 x Hai-7124, F2 (2007).CH-F2_chr01N/AAD_chr.01113.1BNL3580View
2Guazuncho-2 x VH8-4602, BC1 (2005)Guazuncho-2 x VH8-4602, BC1 (2005).GV-BC1_chr01N/AAD_chr.01196.3BNL3580View
3Guazuncho-2 x VH8-4602, BC2 (2005)Guazuncho-2 x VH8-4602, BC2 (2005).GV-BC2_chr01N/AAD_chr.01108.7BNL3580View
4Guazuncho-2 x VH8-4602, consensus (2009)Guazuncho-2 x VH8-4602, consensus (2009).GV-cons_c01N/AAD_chr.01107.04BNL3580View
5Handan-208 x Pima-90, F2:3 (2007)Handan-208 x Pima-90, F2:3 (2007).HP-F2:3_chr01N/AAD_chr.0137.6BNL3580View
6Monsanto SSR Bin Map, (2009)Monsanto SSR Bin Map, (2009).BIN-SSR_chr01N/AAD_chr.01110BNL3580View
7AD-genome wide Reference Map (2009)AD-genome wide Reference Map (2009).Ref-chr01N/AAD_chr.01173BNL3580View
8TM-1 x 3-79, RIL (2006)TM-1 x 3-79, RIL (2006).T3-RIL_chr.15bN/AAD_chr.1514.6BNL3580View
9TM-1 x 3-79, RIL (2012)TM-1 x 3-79, RIL (2012).T3-RIL.12_c01N/AAD_chr.0123.15BNL3580View
10Xinluzao-1 x Hai-7124, F2 (2008)Xinluzao-1 x Hai-7124, F2 (2008).XH-F2_lg23/chr01N/AAD_chr.0166.8BNL3580View
11Emian-22 x 3-79, BC1 (2011)Emian-22 x 3-79, BC1 (2011).E3-BC1_chr01N/AAD_chr.0152.22BNL3580View
12AD-genome wide Reference Map (2009)AD-genome wide Reference Map (2009).Ref-chr15N/AAD_chr.15129BNL3580View
13TM-1 x 3-79, RIL (2014)T3-RIL.14_chr01N/AAD_chr.01121.2BNL3580View
14PD 94042 x (AD)4-08, F2 (2016)PA-F2_chr01N/AAt.010BNL3580View
15Jiang-Ling-Zhong-Mian x Zhe-Jiang-Xiao-Shan-Lu-Shu, F2 (2008)Jiang-Ling-Zhong-Mian x Zhe-Jiang-Xiao-Shan-Lu-Shu, F2 (2008).JZ-F2_A01N/AA_chr.01103.2BNL3580-aView
16TM-1 x Hai-7124, BC1 (2007)TM-1 x Hai-7124, BC1 (2007).TH-BC1_chr01N/AAD_chr.0145.5BNL3580-230View
17TM-1 x Hai-7124, BC1 (2008)TM-1 x Hai-7124, BC1 (2008).TH-BC1.08_chr01/A1N/AAD_chr.0149.03BNL3580-230View
18Vsg x (TM-1 x Hai-7124), DH (2005)Vsg x (TM-1 x Hai-7124), DH (2005).VTH-DH.05_chr01.2N/AAD_chr.01117.7BNL3580-230View
19TM-1 x 3-79, RIL (2012.v3)T3-RIL.12v3_chr.01N/AAD_chr.01121.23BNL3580View
Image
File NameLegend
45_FISH_GEN-178-1117_fig2.jpgBAC clones and their corresponding genetic markers of the 22 probes according to FISH signal patterns in Figure 1. [Image from Wang et al., 2008, GEN-178-1117]
48_FISH_TAG-115-675.jpgTwenty-six individual cotton mitotic chromosomes with FISH signals derived from the chromosome-speciWc BACs, and comparisons of linkage and FISH maps. [Image from Wang 2007, TAG-115-675]