|
|
Marker Overview
| Name | BNL3580 |
|---|
| Genbank ID | N/A |
|---|
| Type | SSR |
|---|
| Species | Gossypium hirsutum |
|---|
| Germplasm | Deltapine 90 |
|---|
| Source Sequence | BNL3580_orig
|
|---|
| Source Type | genomic |
|---|
| Repeat Motif | (AC)15 |
|---|
| PCR Condition | Annealing temperature: 55 |
|---|
| Primer 1 | BNL3580_F: CTTGTTTACATTCCCTTCTTTATACC |
|---|
| Primer 2 | BNL3580_R: CAAAGGCGAACTCTTCCAAA |
|---|
| Polymorphism | P_ BNL3580 |
|---|
| Comment | Primer data obtained in 2000 |
|---|
Relationships
This genetic_marker is adjacent to the following primer feature(s):
This genetic_marker is adjacent to the following QTL feature(s):
The following marker_locus feature(s) are an instance of this genetic_marker:
The following sequence_feature feature(s) derives from this genetic_marker:
Alignments
The following features are aligned
Sequence
>BNL3580 ID=BNL3580|Name=BNL3580|organism=Gossypium hirsutum|type=genetic_marker|length=217bp
CTTGTTTACATTCCCTTCTTTATACCGTTTCTCTGCAAGAAAAACACACA
CACACACACACACACACACACACAAAAGAAAAAAAAAGTAGGAAAGAAAG
GAAAAGAGGAAAGGTTAATTTATGAAAAAATTAAAGGGAAAAACAAAAGA
AGAAGGAGAAAAAAAAAACGTTTATTTTTTCTTAAAAAATATTATTTTTT
GGAAGAGTTCGCCTTTG
Map Positions
| # | Map Name | Linkage Group | Bin | Chromosome | Position | Locus | MapViewer |
|---|
| 1 | CCRI-36 x Hai-7124, F2 (2007) | CCRI-36 x Hai-7124, F2 (2007).CH-F2_chr01 | N/A | AD_chr.01 | 113.1 | BNL3580 | View |
| 2 | Guazuncho-2 x VH8-4602, BC1 (2005) | Guazuncho-2 x VH8-4602, BC1 (2005).GV-BC1_chr01 | N/A | AD_chr.01 | 196.3 | BNL3580 | View |
| 3 | Guazuncho-2 x VH8-4602, BC2 (2005) | Guazuncho-2 x VH8-4602, BC2 (2005).GV-BC2_chr01 | N/A | AD_chr.01 | 108.7 | BNL3580 | View |
| 4 | Guazuncho-2 x VH8-4602, consensus (2009) | Guazuncho-2 x VH8-4602, consensus (2009).GV-cons_c01 | N/A | AD_chr.01 | 107.04 | BNL3580 | View |
| 5 | Handan-208 x Pima-90, F2:3 (2007) | Handan-208 x Pima-90, F2:3 (2007).HP-F2:3_chr01 | N/A | AD_chr.01 | 37.6 | BNL3580 | View |
| 6 | Monsanto SSR Bin Map, (2009) | Monsanto SSR Bin Map, (2009).BIN-SSR_chr01 | N/A | AD_chr.01 | 110 | BNL3580 | View |
| 7 | AD-genome wide Reference Map (2009) | AD-genome wide Reference Map (2009).Ref-chr01 | N/A | AD_chr.01 | 173 | BNL3580 | View |
| 8 | TM-1 x 3-79, RIL (2006) | TM-1 x 3-79, RIL (2006).T3-RIL_chr.15b | N/A | AD_chr.15 | 14.6 | BNL3580 | View |
| 9 | TM-1 x 3-79, RIL (2012) | TM-1 x 3-79, RIL (2012).T3-RIL.12_c01 | N/A | AD_chr.01 | 23.15 | BNL3580 | View |
| 10 | Xinluzao-1 x Hai-7124, F2 (2008) | Xinluzao-1 x Hai-7124, F2 (2008).XH-F2_lg23/chr01 | N/A | AD_chr.01 | 66.8 | BNL3580 | View |
| 11 | Emian-22 x 3-79, BC1 (2011) | Emian-22 x 3-79, BC1 (2011).E3-BC1_chr01 | N/A | AD_chr.01 | 52.22 | BNL3580 | View |
| 12 | AD-genome wide Reference Map (2009) | AD-genome wide Reference Map (2009).Ref-chr15 | N/A | AD_chr.15 | 129 | BNL3580 | View |
| 13 | TM-1 x 3-79, RIL (2014) | T3-RIL.14_chr01 | N/A | AD_chr.01 | 121.2 | BNL3580 | View |
| 14 | PD 94042 x (AD)4-08, F2 (2016) | PA-F2_chr01 | N/A | At.01 | 0 | BNL3580 | View |
| 15 | Jiang-Ling-Zhong-Mian x Zhe-Jiang-Xiao-Shan-Lu-Shu, F2 (2008) | Jiang-Ling-Zhong-Mian x Zhe-Jiang-Xiao-Shan-Lu-Shu, F2 (2008).JZ-F2_A01 | N/A | A_chr.01 | 103.2 | BNL3580-a | View |
| 16 | TM-1 x Hai-7124, BC1 (2007) | TM-1 x Hai-7124, BC1 (2007).TH-BC1_chr01 | N/A | AD_chr.01 | 45.5 | BNL3580-230 | View |
| 17 | TM-1 x Hai-7124, BC1 (2008) | TM-1 x Hai-7124, BC1 (2008).TH-BC1.08_chr01/A1 | N/A | AD_chr.01 | 49.03 | BNL3580-230 | View |
| 18 | Vsg x (TM-1 x Hai-7124), DH (2005) | Vsg x (TM-1 x Hai-7124), DH (2005).VTH-DH.05_chr01.2 | N/A | AD_chr.01 | 117.7 | BNL3580-230 | View |
| 19 | TM-1 x 3-79, RIL (2012.v3) | T3-RIL.12v3_chr.01 | N/A | AD_chr.01 | 121.23 | BNL3580 | View |
Image
| File Name | Legend |
|---|
| 45_FISH_GEN-178-1117_fig2.jpg | BAC clones and their corresponding genetic markers of the 22 probes according to FISH signal patterns in Figure 1. [Image from Wang et al., 2008, GEN-178-1117] |
| 48_FISH_TAG-115-675.jpg | Twenty-six individual cotton mitotic chromosomes with FISH signals derived from the chromosome-speciWc BACs, and comparisons of linkage and FISH maps. [Image from Wang 2007, TAG-115-675] |
|
