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Marker Overview
| Name | BNL3558 |
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| Genbank ID | N/A |
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| Type | SSR |
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| Species | Gossypium hirsutum |
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| Germplasm | Deltapine 90 |
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| Source Sequence | BNL3558_orig
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| Source Type | genomic |
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| Repeat Motif | (AC)11 |
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| PCR Condition | Annealing temperature: 55 |
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| Primer 1 | BNL3558_F: AAGCAAATCATGATGAACATACG |
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| Primer 2 | BNL3558_R: TGCGAAGAGTAGCTCTGCTG |
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| Polymorphism | P_ BNL3558 |
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| Comment | Primer data obtained in 2000 |
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Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Map Positions
| # | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
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| 1 | (SM3 x SM12) x (X4133 x 8891), 4WC (2008) | AD_ch18_Dt.13 | N/A | 31.6 | BNL3558 | View |
| 2 | Acala-44 x Pima S-7, F2 (2004) | AD_ch18_Dt.13 | N/A | 92 | BNL3558 | View |
| 3 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch18_Dt.13 | N/A | 100.16 | BNL3558 | View |
| 4 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch18_Dt.13 | N/A | 67.8 | BNL3558 | View |
| 5 | AD-genome wide Reference Map (2009) | AD_ch18_Dt.13 | N/A | 163 | BNL3558 | View |
| 6 | TM-1 x 3-79, RIL (2012) | AD_ch18_Dt.13 | N/A | 32.87 | BNL3558 | View |
| 7 | Xinluzao-1 x Hai-7124, F2 (2008) | AD_ch18_Dt.13 | N/A | 37.2 | BNL3558 | View |
| 8 | Emian-22 x 3-79, BC1 (2011) | AD_ch18_Dt.13 | N/A | 101.56 | BNL3558 | View |
| 9 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch18_Dt.13 | N/A | 111.1 | BNL3558 | View |
| 10 | Guazuncho-2 x VH8-4602, BC2 (2005) | AD_ch18_Dt.13 | N/A | 71.6 | BNL3558 | View |
| 11 | Guazuncho-2 x VH8-4602, RIL (2009) | AD_ch18_Dt.13 | N/A | 82.29 | BNL3558 | View |
| 12 | AD-genome wide Reference Map (2009) | AD_ch13_At.13 | N/A | 120 | BNL3558 | View |
| 13 | H18 x 3-79, F2 (2005) | AD_ch18_Dt.13 | N/A | 28.1 | BNL3558 | View |
| 14 | DH962 x Jinmian-6, F2 (2009) | AD_ch18_Dt.13 | N/A | 40.6 | BNL3558 | View |
| 15 | DH962 x Jinmian-6, F2 (2009) | AD_ch18_Dt.13 | N/A | 40.6 | BNL3558 | View |
| 16 | DH962 X Ji Mian 5, F2 (2015) | AD_ch25_Dt.06 | N/A | 92.64 | BNL3558 | View |
| 17 | TM-1 x 3-79, RIL (2014) | AD_ch18_Dt.13 | N/A | 34.3 | BNL3558 | View |
| 18 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch18_Dt.13 | N/A | 39.3 | BNL3558 | View |
| 19 | CCRI-36 x Hai-7124, F2 (2007) | AD_ch13_At.13 | N/A | 99.1 | BNL3558b | View |
| 20 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch18_Dt.13 | N/A | 67.8 | BNL3558b | View |
| 21 | Monsanto SSR Bin Map, (2009) | AD_ch18_Dt.13 | N/A | 101 | BNL3558b | View |
| 22 | CCRI-36 x Hai-7124, F2 (2007) | AD_ch18_Dt.13 | N/A | 32.7 | BNL3558a | View |
| 23 | Vsg x (TM-1 x Hai-7124), DH (2005) | AD_ch18_Dt.13 | N/A | 66.4 | BNL3558-205 | View |
| 24 | TM-1 x Hai-7124, BC1 (2007) | AD_ch18_Dt.13 | N/A | 78.1 | BNL3558-205 | View |
| 25 | TM-1 x Hai-7124, BC1 (2008) | AD_ch18_Dt.13 | N/A | 78.17 | BNL3558-205 | View |
| 26 | TM-1 x Hai-7124, BC1 (2005.v0) | AD_ch18_Dt.13 | N/A | 101.7 | BNL3558-205 | View |
| 27 | TM-1 x Hai-7124, BC1 (2012) | AD_ch18_Dt.13 | N/A | 42.6 | BNL3558-205 | View |
| 28 | TM-1 x 3-79, RIL (2012.v3) | AD_ch18_Dt.13 | N/A | 34.29 | BNL3558 | View |
Sequence
>BNL3558 ID=BNL3558; Name=BNL3558; organism=Gossypium hirsutum; type=genetic_marker; length=210bp
AAGCAAATCATGATGAACATACGGAAACTTTGACAGAATACTATCGGTGT
CAAGATGATTTAATTTTTAAAAGTACATAGACTAAACCTTTACCAAAATA
CAGGGATTGACAATACACACACACACACACACACACTTACATCAGGAAAC
ATCATACTGACAAGCTTATTAGAAAAATACTCATATACAGCAGCAGAGCT
ACTCTTCGCA
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