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Marker Overview
Name | BNL3452 |
Genbank ID | N/A |
Type | SSR |
Species | Gossypium hirsutum |
Germplasm | Deltapine 90 |
Source Sequence | BNL3452_orig
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Source Type | genomic |
Repeat Motif | (CA)13 |
PCR Condition | Annealing temperature: 55 |
Primer 1 | BNL3452_F: TGTAACTGAGCAGCCGTACG |
Primer 2 | BNL3452_R: GCCAAAGCAGAGTGAGATCC |
Polymorphism | P_ BNL3452 |
Comment | Primer data obtained in 2000 |
Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Map Positions
# | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
1 | (SM3 x SM12) x (X4133 x 8891), 4WC (2008) | AD_ch19_Dt.05 | N/A | 18.9 | BNL3452 | View |
2 | 7235 x TM-1, RIL (2007) | AD_ch10_At.10 | N/A | 18.6 | BNL3452 | View |
3 | Emian-22 x 3-79, BC1 (2011) | AD_ch19_Dt.05 | N/A | 207.59 | BNL3452 | View |
4 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch19_Dt.05 | N/A | 31.5 | BNL3452 | View |
5 | Guazuncho-2 x VH8-4602, BC2 (2005) | AD_ch19_Dt.05 | N/A | 13.1 | BNL3452 | View |
6 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch19_Dt.05 | N/A | 25.73 | BNL3452 | View |
7 | Guazuncho-2 x VH8-4602, RIL (2009) | AD_ch19_Dt.05 | N/A | 8.09 | BNL3452 | View |
8 | Hai-7124 x Junmian-1, BC1 (2008) part | AD_ch19_Dt.05 | N/A | 96.5 | BNL3452 | View |
9 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch19_Dt.05 | N/A | 33 | BNL3452 | View |
10 | Palmeri x K-101, F2 (2007) | AD_ch19_Dt.05 | N/A | 26.5 | BNL3452 | View |
11 | AD-genome wide Reference Map (2009) | AD_ch19_Dt.05 | N/A | 60 | BNL3452 | View |
12 | AD-genome wide Reference Map (2009) | AD_ch05_At.05 | N/A | 16 | BNL3452 | View |
13 | TM-1 x 3-79, RIL (2006) | AD_ch19_Dt.05 | N/A | 19.6 | BNL3452 | View |
14 | Xinluzao-1 x Hai-7124, F2 (2008) | AD_ch19_Dt.05 | N/A | 320.6 | BNL3452 | View |
15 | Zhongmiansuo-12 x 8891, RIL (2007) | AD_ch05_At.05 | N/A | 3 | BNL3452 | View |
16 | CCRI-36 x Hai-7124, F2 (2007) | AD_ch19_Dt.05 | N/A | 196.4 | BNL3452 | View |
17 | 7235 x TM-1, F2:3 (2005) | AD_ch10_At.10 | N/A | 0 | BNL3452 | View |
18 | Baimian 1 x TM-1 , F2:3 (2014) | AD_ch19_Dt.05 | N/A | 14.7 | BNL3452 | View |
19 | TM-1 x (TX-0256 + TX-1046), CSIL (2016) | AD_ch05_At.05 | N/A | 28.6 | BNL3452 | View |
20 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch19_Dt.05 | N/A | 196 | BNL3452 | View |
21 | TM-1 x 3-79, RIL (2012) | AD_ch05_At.05 | N/A | 22.74 | BNL3452a | View |
22 | TM-1 x 3-79, RIL (2014) | AD_ch05_At.05 | N/A | 180.2 | BNL3452a | View |
23 | Monsanto SSR Bin Map, (2009) | AD_ch05_At.05 | N/A | 181 | BNL3452a | View |
24 | TM-1 x 3-79, RIL (2012) | AD_ch19_Dt.05 | N/A | 22.59 | BNL3452b | View |
25 | TM-1 x 3-79, RIL (2014) | AD_ch19_Dt.05 | N/A | 160.2 | BNL3452b | View |
26 | Monsanto SSR Bin Map, (2009) | AD_ch19_Dt.05 | N/A | 221 | BNL3452b | View |
27 | TM-1 x Hai-7124, BC1 (2007) | AD_ch05_At.05 | N/A | 29.2 | BNL3452-170 | View |
28 | TM-1 x Hai-7124, BC1 (2008) | AD_ch05_At.05 | N/A | 26.14 | BNL3452-170 | View |
29 | TM-1 x Hai-7124, BC1 (2012) | AD_ch05_At.05 | N/A | 183.6 | BNL3452-170 | View |
30 | TM-1 x Hai-7124, BC1 (2007) | AD_ch19_Dt.05 | N/A | 23.7 | BNL3452-180 | View |
31 | TM-1 x Hai-7124, BC1 (2008) | AD_ch19_Dt.05 | N/A | 23.5 | BNL3452-180 | View |
32 | Vsg x (TM-1 x Hai-7124), DH (2005) | AD_ch19_Dt.05 | N/A | 0 | BNL3452-180 | View |
33 | TM-1 x Hai-7124, BC1 (2005.v0) | AD_ch19_Dt.05 | N/A | 15.7 | BNL3452-180 | View |
34 | TM-1 x Hai-7124, BC1 (2012) | AD_ch19_Dt.05 | N/A | 166.8 | BNL3452-180 | View |
35 | Vsg x (TM-1 x Hai-7124), DH (2005) | AD_ch19_Dt.05 | N/A | 26.1 | BNL3452-195 | View |
36 | TM-1 x 3-79, RIL (2012.v3) | AD_ch05_At.05 | N/A | 180.21 | BNL3452a | View |
37 | TM-1 x 3-79, RIL (2012.v3) | AD_ch19_Dt.05 | N/A | 160.17 | BNL3452b | View |
38 | MGG-293-793, MAGIC (2018) | AD_ch19_Dt.05 | N/A | 214.1 | BNL3452 | View |
Sequence
>BNL3452 ID=BNL3452; Name=BNL3452; organism=Gossypium hirsutum; type=genetic_marker; length=191bp TGTAACTGAGCAGCCGTACGTTCTTCATGATAGAAATTCATTCCATGATT TGATTTGTTCGACGATGGACACACACACACACACACACACACACATATAT AATATAATACACTGTAACTTTTGGGAAGGTTTCCTGTGCTGGTCGACAGC TGGAATTGAACACCGCAACAGGGATCTCACTCTGCTTTGGC
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