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Marker Overview
| Name | BNL3441 |
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| Genbank ID | N/A |
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| Type | SSR |
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| Species | Gossypium hirsutum |
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| Germplasm | Deltapine 90 |
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| Source Sequence | BNL3441_orig
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| Source Type | genomic |
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| Repeat Motif | (AC)18, (AT)2(AC)18(AT)4 |
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| PCR Condition | Annealing temperature: 55 |
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| Primer 1 | BNL3441_F: CGTCATAAACCGTGCTTGTG |
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| Primer 2 | BNL3441_R: GGCCACTTTAAGGCTGTCAC |
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| Polymorphism | P_ BNL3441 |
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| Comment | Primer data obtained in 2000 |
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Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Image
| File Name | Legend |
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| 48_FISH_TAG-115-675.jpg | Twenty-six individual cotton mitotic chromosomes with FISH signals derived from the chromosome-speciWc BACs, and comparisons of linkage and FISH maps. [Image from Wang 2007, TAG-115-675] |
Map Positions
| # | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
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| 1 | 3-79 x NM24016, RIL (2008) | AD_ch03_At.03 | N/A | 0 | BNL3441 | View |
| 2 | CCRI-36 x Hai-7124, F2 (2007) | AD_ch03_At.03 | N/A | 19 | BNL3441 | View |
| 3 | Emian-22 x 3-79, BC1 (2011) | AD_ch03_At.03 | N/A | 83.35 | BNL3441 | View |
| 4 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch03_At.03 | N/A | 39.7 | BNL3441 | View |
| 5 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch03_At.03 | N/A | 35.73 | BNL3441 | View |
| 6 | Xinluzao-1 x Hai-7124, F2 (2008) | AD_ch03_At.03 | N/A | 34 | BNL3441 | View |
| 7 | AD-genome wide Reference Map (2009) | AD_ch03_At.03 | N/A | 65 | BNL3441 | View |
| 8 | TM-1 x 3-79, RIL (2006) | AD_ch03_At.03 | N/A | 52 | BNL3441 | View |
| 9 | TM-1 x 3-79, RIL (2012) | AD_ch03_At.03 | N/A | 68.58 | BNL3441 | View |
| 10 | T582 x Hai-7124, F2 (2010) | AD_ch03_At.03 | N/A | 66.6 | BNL3441 | View |
| 11 | TM-1 x 3-79, RIL (2014) | AD_ch03_At.03 | N/A | 47.8 | BNL3441 | View |
| 12 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch03_At.03 | N/A | 107.3 | BNL3441 | View |
| 13 | SG 747 x Giza 75, BIL (2013) | AD_ch03_At.03 | N/A | 59.2 | BNL3441 | View |
| 14 | Monsanto SSR Bin Map, (2009) | AD_ch03_At.03 | N/A | 81 | BNL3441 | View |
| 15 | Monsanto SSR Bin Map, (2009) | AD_ch03_At.03 | N/A | 61 | BNL3441a | View |
| 16 | TM-1 x Hai-7124, BC1 (2007) | AD_ch03_At.03 | N/A | 66.6 | BNL3441-205 | View |
| 17 | TM-1 x Hai-7124, BC1 (2008) | AD_ch03_At.03 | N/A | 64.45 | BNL3441-205 | View |
| 18 | Vsg x (TM-1 x Hai-7124), DH (2005) | AD_ch03_At.03 | N/A | 36.2 | BNL3441-205 | View |
| 19 | TM-1 x Hai-7124, BC1 (2012) | AD_ch03_At.03 | N/A | 60.5 | BNL3441-205 | View |
| 20 | TM-1 x 3-79, RIL (2012.v3) | AD_ch03_At.03 | N/A | 47.79 | BNL3441 | View |
| 21 | PD 94042 x (AD)4-08, F2 (2016) | AD_ch03_At.03 | N/A | 129 | BNL3441 | View |
Sequence
>BNL3441 ID=BNL3441; Name=BNL3441; organism=Gossypium hirsutum; type=genetic_marker; length=210bp
CGTCATAAACCGTGCTTGTGATTATCTCTAAGCATTTATACTAACACTTG
AAATTCAGTGAAAAAATGAGTAGAAACATACTTGATATTTATATTTTATA
TTAAACCCAAGAACTTAGTATTAATTAAAAACATGAATTGAATATATATG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTNATATGTGACAGCCT
TAAAGTGGCC
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