BNL3400, BNL3400 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL3400
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL3400_orig
Source Typegenomic
Repeat Motif(AC)23+(AT)2
PCR ConditionAnnealing temperature: 55
Primer 1BNL3400_F: CAATTTTTCATAAACAGAGATCCG
Primer 2BNL3400_R: GTCTTATGCTTGTCATTCTGGG
PolymorphismP_ BNL3400
CommentPrimer data obtained in 2000
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A05chromosomeA05:39631..39804 -
tig00004738_CRI-A2_v1.0.a1chromosometig00004738_CRI-A2_v1.0.a1:165661..165848 +
A05chromosomeA05:23238..23411 -
Ghir_A05chromosomeGhir_A05:70479..70650 -
A05chromosomeA05:55762..55935 -
A05chromosomeA05:53019..53189 -
A05chromosomeA05:194948..195121 -
CM017640.1chromosomeCM017640.1:61832..62041 -
A05chromosomeA05:52770..52943 -
Chr05chromosomeChr05:50743..50908 -
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL3400_origBNL3400_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1(SM3 x SM12) x (X4133 x 8891), 4WC (2008)AD_ch19_Dt.05N/A34.6BNL3400View
2AD-genome wide Reference Map (2009)AD_ch19_Dt.05N/A29BNL3400View
3TM-1 x 3-79, RIL (2012)AD_ch05_At.05N/A2.62BNL3400View
4Yumian-1 x T586, RIL (2006)AD_ch05_At.05N/A20.9BNL3400View
5Yumian-1 x T586, RIL (2015)AD_ch05_At.05N/A0BNL3400View
6TM-1 x 3-79, RIL (2014)AD_ch05_At.05N/A197.5BNL3400View
7TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch05_At.05N/A19.6BNL3400View
8CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch05_At.05N/A6.7BNL3400View
9CCRI-35 x Yumian-1, RIL (2015)AD_ch05_At.05N/A113.2BNL3400View
10CCRI-35 x Yumian-1, RIL (2017)AD_ch05_At.05N/A0BNL3400View
11Monsanto SSR Bin Map, (2009)AD_ch05_At.05N/A201BNL3400View
12Vsg x (TM-1 x Hai-7124), DH (2005)AD_ch19_Dt.05N/A9.3BNL3400-175View
13Yumian-1 x T586, RIL (2009)AD_ch19_Dt.05N/A60.6BNL3400/180t(C19)View
14TM-1 x 3-79, RIL (2012.v3)AD_ch05_At.05N/A197.52BNL3400View
15PD 94042 x (AD)4-08, F2 (2016)AD_ch05_At.05N/A2.4BNL3400View
Sequence
>BNL3400 ID=BNL3400; Name=BNL3400; organism=Gossypium hirsutum; type=genetic_marker; length=177bp
CAATTTTTCATAAACAGAGATCCGAAATTACACTTTTTCAGTATCGGTAA
AATTCAGGGTCATTACACACACACACACACACACACACACACACACACAC
ACACACACACATATAAGTAATCAATATAATCTTATAACATAATTTACATT
CACTTCCCAGAATGACAAGCATAAGAC