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Marker Overview
Name | BNL3400 |
Genbank ID | N/A |
Type | SSR |
Species | Gossypium hirsutum |
Germplasm | Deltapine 90 |
Source Sequence | BNL3400_orig
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Source Type | genomic |
Repeat Motif | (AC)23+(AT)2 |
PCR Condition | Annealing temperature: 55 |
Primer 1 | BNL3400_F: CAATTTTTCATAAACAGAGATCCG |
Primer 2 | BNL3400_R: GTCTTATGCTTGTCATTCTGGG |
Polymorphism | P_ BNL3400 |
Comment | Primer data obtained in 2000 |
Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Map Positions
# | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
1 | (SM3 x SM12) x (X4133 x 8891), 4WC (2008) | AD_ch19_Dt.05 | N/A | 34.6 | BNL3400 | View |
2 | AD-genome wide Reference Map (2009) | AD_ch19_Dt.05 | N/A | 29 | BNL3400 | View |
3 | TM-1 x 3-79, RIL (2012) | AD_ch05_At.05 | N/A | 2.62 | BNL3400 | View |
4 | Yumian-1 x T586, RIL (2006) | AD_ch05_At.05 | N/A | 20.9 | BNL3400 | View |
5 | Yumian-1 x T586, RIL (2015) | AD_ch05_At.05 | N/A | 0 | BNL3400 | View |
6 | TM-1 x 3-79, RIL (2014) | AD_ch05_At.05 | N/A | 197.5 | BNL3400 | View |
7 | TM-1 x (TX-0256 + TX-1046), CSIL (2016) | AD_ch05_At.05 | N/A | 19.6 | BNL3400 | View |
8 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch05_At.05 | N/A | 6.7 | BNL3400 | View |
9 | CCRI-35 x Yumian-1, RIL (2015) | AD_ch05_At.05 | N/A | 113.2 | BNL3400 | View |
10 | CCRI-35 x Yumian-1, RIL (2017) | AD_ch05_At.05 | N/A | 0 | BNL3400 | View |
11 | Monsanto SSR Bin Map, (2009) | AD_ch05_At.05 | N/A | 201 | BNL3400 | View |
12 | Vsg x (TM-1 x Hai-7124), DH (2005) | AD_ch19_Dt.05 | N/A | 9.3 | BNL3400-175 | View |
13 | Yumian-1 x T586, RIL (2009) | AD_ch19_Dt.05 | N/A | 60.6 | BNL3400/180t(C19) | View |
14 | TM-1 x 3-79, RIL (2012.v3) | AD_ch05_At.05 | N/A | 197.52 | BNL3400 | View |
15 | PD 94042 x (AD)4-08, F2 (2016) | AD_ch05_At.05 | N/A | 2.4 | BNL3400 | View |
Sequence
>BNL3400 ID=BNL3400; Name=BNL3400; organism=Gossypium hirsutum; type=genetic_marker; length=177bp CAATTTTTCATAAACAGAGATCCGAAATTACACTTTTTCAGTATCGGTAA AATTCAGGGTCATTACACACACACACACACACACACACACACACACACAC ACACACACACATATAAGTAATCAATATAATCTTATAACATAATTTACATT CACTTCCCAGAATGACAAGCATAAGAC
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