|
Marker Overview
Name | BNL3279 |
Genbank ID | N/A |
Type | SSR |
Species | Gossypium hirsutum |
Germplasm | Deltapine 90 |
Source Sequence | BNL3279_orig
|
Source Type | genomic |
Repeat Motif | (AG)15 |
PCR Condition | Annealing temperature: 55 |
Primer 1 | BNL3279_F: CATGTCCAATGGATGTGTCA |
Primer 2 | BNL3279_R: GGGCCACTTAAAGGCATTCT |
Polymorphism | P_ BNL3279 |
Comment | Primer data obtained in 2000 |
Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Image
File Name | Legend |
CRS-49-1151_F3_poly.jpg | Polymorphisms of BNL1066 and BNL3279 on a reniform nematode resistance trait-association panel. [Image from Dighe et al., 2009, CRS-49-1151] |
CRS-49-1151_F5_poly.jpg | Polymorphisms of BNL1066 and BNL3279 on a reniform nematode resistance DNA panel. [Image from Dighe et al., 2009, CRS-49-1151] |
Map Positions
# | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
1 | Acala-44 x Pima S-7, F2 (2004) | AD_ch20_Dt.10 | N/A | 22.9 | BNL3279 | View |
2 | CCRI-36 x Hai-7124, F2 (2007) | AD_ch09_At.09 | N/A | 193.6 | BNL3279 | View |
3 | Emian-22 x 3-79, BC1 (2011) | AD_ch21_Dt.11 | N/A | 214.26 | BNL3279 | View |
4 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch21_Dt.11 | N/A | 35.3 | BNL3279 | View |
5 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch21_Dt.11 | N/A | 32.93 | BNL3279 | View |
6 | Guazuncho-2 x VH8-4602, RIL (2009) | AD_ch21_Dt.11 | N/A | 17.3 | BNL3279 | View |
7 | Hai-7124 x Junmian-1, BC1 (2008) part | AD_ch21_Dt.11 | N/A | 29.9 | BNL3279 | View |
8 | AD-genome wide Reference Map (2009) | AD_ch09_At.09 | N/A | 15 | BNL3279 | View |
9 | Xinluzao-1 x Hai-7124, F2 (2008) | AD_chU | N/A | 198 | BNL3279 | View |
10 | Yumian-1 x T586, F2:3 (2005) | AD_ch05_At.05 | N/A | 2.8 | BNL3279 | View |
11 | Yumian-1 x T586, F2:7 (2008) | AD_ch21_Dt.11 | N/A | 4.5 | BNL3279 | View |
12 | AD-genome wide Reference Map (2009) | AD_ch21_Dt.11 | N/A | 32 | BNL3279 | View |
13 | Yumian-1 x T586, RIL (2006) | AD_ch21_Dt.11 | N/A | 10.2 | BNL3279 | View |
14 | Yumian-1 x T586, F2:3 (2005.v0) | AD_ch05_At.05 | N/A | 2.8 | BNL3279 | View |
15 | NemX x SJ-2, RIL (2005) | AD_ch11_At.11 | N/A | 158.6 | BNL3279 | View |
16 | Yumian-1 x T586, RIL (2015) | AD_ch21_Dt.11 | N/A | 155.6 | BNL3279 | View |
17 | W10 x TM-1, F2:3 (2015) | AD_ch21_Dt.11 | N/A | 21.2 | BNL3279 | View |
18 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch11_At.11 | N/A | 141 | BNL3279 | View |
19 | Monsanto SSR Bin Map, (2009) | AD_ch21_Dt.11 | N/A | 121 | BNL3279 | View |
20 | TM-1 x Hai-7124, BC1 (2007) | AD_ch21_Dt.11 | N/A | 39.5 | BNL3279-120 | View |
21 | TM-1 x Hai-7124, BC1 (2008) | AD_ch21_Dt.11 | N/A | 31.8 | BNL3279-120 | View |
22 | Vsg x (TM-1 x Hai-7124), DH (2005) | AD_ch21_Dt.11 | N/A | 37.8 | BNL3279-120 | View |
23 | TM-1 x Hai-7124, BC1 (2012) | AD_ch21_Dt.11 | N/A | 145.3 | BNL3279-120 | View |
24 | Yumian-1 x T586, RIL (2009) | AD_ch21_Dt.11 | N/A | 4.3 | BNL3279/120y(C21) | View |
25 | GB713 x Nem-X, F2 (2011) | AD_ch21_Dt.11 | N/A | 184.5 | BNL3279_106 | View |
26 | TM-1 x (TX-0256 + TX-1046), CSIL (2016) | AD_ch03_At.03 | N/A | 33.3 | BNL3279a | View |
27 | TM-1 x (TX-0256 + TX-1046), CSIL (2016) | AD_ch21_Dt.11 | N/A | 143.4 | BNL3279b | View |
28 | Emian-22 x 3-79, BC1 (2015) | AD_ch21_Dt.11 | N/A | 203.2 | BNL3278 | View |
Sequence
>BNL3279 ID=BNL3279; Name=BNL3279; organism=Gossypium hirsutum; type=genetic_marker; length=126bp CATGTCCAATGGATGTGTCATTAGAGAGAGAGAGAGAGAGAGAGAGAGAG AGTACCTCGAATCACCAACAAAATCATTAGAGACAACATCTTCTTCTGTG TATCCAAGAATGCCTTTAAGTGGCCC
|