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Marker Overview
| Name | BNL3241 |
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| Genbank ID | N/A |
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| Type | SSR |
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| Species | Gossypium hirsutum |
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| Germplasm | Deltapine 90 |
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| Source Sequence | BNL3241_orig
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| Source Type | genomic |
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| Repeat Motif | (AT)8+(AG)12 |
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| PCR Condition | Annealing temperature: 55 |
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| Primer 1 | BNL3241_F: GTATTAAAATAATAAGAGTCTAATCTCCCC |
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| Primer 2 | BNL3241_R: GACCATGGACCGAGTTGAGT |
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| Polymorphism | P_ BNL3241 |
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| Comment | Primer data obtained in 2000 |
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Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Map Positions
| # | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
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| 1 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch17_Dt.03 | N/A | 216.6 | BNL3241b | View |
| 2 | HS-46 x MARCABUCAG8US-1-88, RIL (2009) | AD_ch05_At.05 | N/A | 25 | BNL3241-119 | View |
| 3 | AD-genome wide Reference Map (2009) | AD_ch17_Dt.03 | N/A | 101 | BNL3241 | View |
| 4 | Xinluzao-1 x Hai-7124, F2 (2008) | AD_chU | N/A | 35.1 | BNL3241 | View |
| 5 | TM-1 x 3-79, RIL (2012) | AD_ch05_At.05 | N/A | 132.27 | BNL3241 | View |
| 6 | (YM1 x CCRI35) x (YM1 x 7235), 4WC (2012) | AD_ch05_At.05 | N/A | 85.7 | BNL3241 | View |
| 7 | Yumian-1 x 7235, RIL (2015) | AD_ch05_At.05 | N/A | 95.7 | BNL3241 | View |
| 8 | TM-1 x 3-79, RIL (2014) | AD_ch05_At.05 | N/A | 65.3 | BNL3241 | View |
| 9 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch05_At.05 | N/A | 190.2 | BNL3241 | View |
| 10 | Monsanto SSR Bin Map, (2009) | AD_ch05_At.05 | N/A | 41 | BNL3241 | View |
| 11 | LMY22 x LY343, RIL (2016) | chr.22 | N/A | 60.5 | BNL3241 | View |
| 12 | LMY22 x LY343, RIL (2020) | D04 | N/A | 96.37 | BNL3241 | View |
| 13 | TM-1 x Hai-7124, BC1 (2008) | AD_ch05_At.05 | N/A | 143.13 | BNL3241-180 | View |
| 14 | TM-1 x Hai-7124, BC1 (2012) | AD_ch05_At.05 | N/A | 61.9 | BNL3241-180 | View |
| 15 | TM-1 x 3-79, RIL (2012.v3) | AD_ch05_At.05 | N/A | 65.34 | BNL3241 | View |
| 16 | PD 94042 x (AD)4-08, F2 (2016) | AD_ch05_At.05 | N/A | 238.2 | BNL3241 | View |
Sequence
>BNL3241 ID=BNL3241; Name=BNL3241; organism=Gossypium hirsutum; type=genetic_marker; length=126bp
GTATTAAAATAATAAGAGTCTAATCTCCCCATATATATATATATATAGAG
AGAGAGAGAGAGAGAGAGAGAAAACAGGCCTAAAATTTTGTTTGGGCCTA
AGTCAAACTCAACTCGGTCCATGGTC
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