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Marker Overview
Name | BNL2961 |
Genbank ID | N/A |
Type | SSR |
Species | Gossypium hirsutum |
Germplasm | Deltapine 90 |
Source Sequence | BNL2961_orig
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Source Type | genomic |
Repeat Motif | (GA)11 |
PCR Condition | Annealing temperature: 55 |
Primer 1 | BNL2961_F: TCGAAAGGGTGTTTCTTCTT |
Primer 2 | BNL2961_R: GGGGATGCTTGTCACATCTT |
Polymorphism | P_ BNL2961 |
Comment | Primer data obtained in 2000 |
Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Map Positions
# | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
1 | 7235 x TM-1, RIL (2007) | AD_ch24_Dt.08 | N/A | 39.1 | BNL2961 | View |
2 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch24_Dt.08 | N/A | 47.71 | BNL2961 | View |
3 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch08_At.08 | N/A | 67.85 | BNL2961 | View |
4 | Guazuncho-2 x VH8-4602, RIL (2009) | AD_ch24_Dt.08 | N/A | 41.99 | BNL2961 | View |
5 | Palmeri x K-101, F2 (2007) | AD_ch24_Dt.08 | N/A | 74.4 | BNL2961 | View |
6 | AD-genome wide Reference Map (2009) | AD_ch08_At.08 | N/A | 66 | BNL2961 | View |
7 | Xinluzao-1 x Hai-7124, F2 (2008) | AD_ch24_Dt.08 | N/A | 144.6 | BNL2961 | View |
8 | CCRI-36 x Hai-7124, F2 (2007) | AD_ch24_Dt.08 | N/A | 140 | BNL2961 | View |
9 | AD-genome wide Reference Map (2009) | AD_ch24_Dt.08 | N/A | 171 | BNL2961 | View |
10 | (YM1 x CCRI35) x (YM1 x 7235), 4WC (2012) | AD_ch24_Dt.08 | N/A | 46.3 | BNL2961 | View |
11 | 7235 x TM-1, F2:3 (2005) | AD_ch24_Dt.08 | N/A | 10.4 | BNL2961 | View |
12 | Yumian-1 x 7235, RIL (2015) | AD_ch24_Dt.08 | N/A | 37.5 | BNL2961 | View |
13 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch24_Dt.08 | N/A | 89.5 | BNL2961 | View |
14 | Monsanto SSR Bin Map, (2009) | AD_ch24_Dt.08 | N/A | 61 | BNL2961 | View |
15 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch08_At.08 | N/A | 87.3 | BNL2961a | View |
16 | Guazuncho-2 x VH8-4602, BC2 (2005) | AD_ch08_At.08 | N/A | 23.8 | BNL2961a | View |
17 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch08_At.08 | N/A | 40.2 | BNL2961a | View |
18 | TM-1 x 3-79, RIL (2012) | AD_ch24_Dt.08 | N/A | 61.12 | BNL2961a | View |
19 | TM-1 x 3-79, RIL (2014) | AD_ch24_Dt.08 | N/A | 64.2 | BNL2961a | View |
20 | Monsanto SSR Bin Map, (2009) | AD_ch08_At.08 | N/A | 61 | BNL2961a | View |
21 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch24_Dt.08 | N/A | 63.5 | BNL2961b | View |
22 | Guazuncho-2 x VH8-4602, BC2 (2005) | AD_ch24_Dt.08 | N/A | 20.6 | BNL2961b | View |
23 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch23_Dt.09 | N/A | 28 | BNL2961b | View |
24 | TM-1 x 3-79, RIL (2012) | AD_ch08_At.08 | N/A | 79.83 | BNL2961b | View |
25 | TM-1 x 3-79, RIL (2014) | AD_ch08_At.08 | N/A | 89.7 | BNL2961b | View |
26 | Monsanto SSR Bin Map, (2009) | AD_ch24_Dt.08 | N/A | 41 | BNL2961b | View |
27 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch24_Dt.08 | N/A | 150.9 | BNL2961c | View |
28 | Yumian-1 x T586, F2:3 (2005.v0) | AD_ch08_At.08 | N/A | 35.6 | BNL2961(A02,D03,C10) | View |
29 | Yumian-1 x T586, F2:3 (2005.v0) | AD_ch24_Dt.08 | N/A | 35.6 | BNL2961(A02,D03,C10) | View |
30 | TM-1 x 3-79, RIL (2012.v3) | AD_ch08_At.08 | N/A | 89.68 | BNL2961b | View |
31 | TM-1 x 3-79, RIL (2012.v3) | AD_ch24_Dt.08 | N/A | 67.16 | BNL2961a | View |
32 | PD 94042 x (AD)4-08, F2 (2016) | AD_ch24_Dt.08 | N/A | 47.6 | BNL2961 | View |
Sequence
>BNL2961 ID=BNL2961; Name=BNL2961; organism=Gossypium hirsutum; type=genetic_marker; length=221bp TCGAAAGGGTGTTTCTTCTTCTGTTATATATATATATATATAGAGAGAGA GAGAGAGAGAGAGAAGCATGTNNAGAAATAATAAGTAAGAATATAGAAAA AAAATAATACAAGCTTTGTAAAGAGGAATAACTTGAACTATATTTTTGAT GAAAGACTTTGACCTAACCTTTAAGAATTTCCTCATCTGAAAACTTTGAA AAAGATGTGACAAGCATCCCC
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