BNL2895, BNL2895 (genetic_marker) Gossypium hirsutum

Marker Overview


Name	BNL2895
Genbank ID	N/A
Type	SSR
Species	Gossypium hirsutum
Germplasm	Deltapine 90
Source Sequence	BNL2895_orig
Source Type	genomic
Repeat Motif	(GA)10
PCR Condition	Annealing temperature: 55
Primer 1	BNL2895_F: CGATTTTACTGCTTCAGACTTG
Primer 2	BNL2895_R: TACCATCTCACGGATCCACA
Polymorphism	P_ BNL2895
Comment	Primer data obtained in 2000

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
D11	chromosome	D11:45304897..45305103 -
CM018225.1	chromosome	CM018225.1:45107319..45107547 -
D5_11	chromosome	D5_11:23221365..23221581 +
D10_11	chromosome	D10_11:43665592..43665799 -
Dt_chr7	chromosome	Dt_chr7:39039793..39039999 +
D11	chromosome	D11:42467301..42467507 -
Ghir_D11	chromosome	Ghir_D11:47329339..47329545 -
D11	chromosome	D11:47005102..47005308 -
D11	chromosome	D11:47325676..47325882 -
D11	chromosome	D11:44622074..44622280 -
Gbar_D11	chromosome	Gbar_D11:44811124..44811347 -
D11	chromosome	D11:47331314..47331540 -
CM017633.1	chromosome	CM017633.1:46958438..46958656 -
CM017659.1	chromosome	CM017659.1:47904491..47904714 -
CM017711.1	chromosome	CM017711.1:45148426..45148651 -
D11	chromosome	D11:47182133..47182339 -
Chr11	chromosome	Chr11:21545771..21545987 +
Chr07	chromosome	Chr07:44782068..44782286 -
chr03	chromosome	chr03:11547800..11547996 +
Chr_03	chromosome	Chr_03:8999511..8999710 +
Chr07	chromosome	Chr07:44972654..44972864 +

Germplasm


Stock Name	Type
Deltapine 90	accession

Relationships

The following sequence_feature feature(s) derives from this genetic_marker:


Feature Name	Unique Name	Species	Type
BNL2895_orig	BNL2895_orig	Gossypium hirsutum	sequence_feature

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	7235 x TM-1, RIL (2007)	AD_ch11_At.11	N/A	0.1	BNL2895	View
2	CCRI-36 x Hai-7124, F2 (2007)	AD_ch21_Dt.11	N/A	70.5	BNL2895	View
3	Emian-22 x 3-79, BC1 (2011)	AD_ch21_Dt.11	N/A	170.67	BNL2895	View
4	Guazuncho-2 x VH8-4602, consensus (2009)	AD_ch11_At.11	N/A	79.15	BNL2895	View
5	Guazuncho-2 x VH8-4602, consensus (2009)	AD_ch21_Dt.11	N/A	73.13	BNL2895	View
6	AD-genome wide Reference Map (2009)	AD_ch11_At.11	N/A	24	BNL2895	View
7	AD-genome wide Reference Map (2009)	AD_ch18_Dt.13	N/A	44	BNL2895	View
8	TM-1 x 3-79, RIL (2006)	AD_ch11_At.11	N/A	31.7	BNL2895	View
9	Xinluzao-1 x Hai-7124, F2 (2008)	AD_ch11_At.11	N/A	159.2	BNL2895	View
10	Yumian-1 x T586, F2:7 (2008)	AD_ch11_At.11	N/A	11.8	BNL2895	View
11	Yumian-1 x T586, F2:3 (2005)	AD_chU	N/A	4.1	BNL2895	View
12	AD-genome wide Reference Map (2009)	AD_ch21_Dt.11	N/A	180	BNL2895	View
13	Yumian-1 x T586, RIL (2006)	AD_ch11_At.11	N/A	44.4	BNL2895	View
14	7235 x TM-1, F2:3 (2005)	AD_ch11_At.11	N/A	11.3	BNL2895	View
15	Yumian-1 x T586, RIL (2015)	AD_ch11_At.11	N/A	65.1	BNL2895	View
16	Yumian-1 x 7235, RIL (2015)	AD_ch11_At.11	N/A	57.3	BNL2895	View
17	GX1135 x GX100-2, F2 (2013)	AD_ch11_At.11	N/A	0.6	BNL2895	View
18	Emian-22 x 3-79, BC1 (2015)	AD_ch21_Dt.11	N/A	162.9	BNL2895	View
19	CCRI 12-4 x (AD)5-7, F2 (2015)	AD_ch21_Dt.11	N/A	16.9	BNL2895	View
20	Guazuncho-2 x VH8-4602, BC1 (2005)	AD_ch11_At.11	N/A	92.6	BNL2895b	View
21	Handan-208 x Pima-90, F2:3 (2007)	AD_ch21_Dt.11	N/A	26.9	BNL2895b	View
22	TM-1 x 3-79, RIL (2012)	AD_ch11_At.11	N/A	104.35	BNL2895b	View
23	TM-1 x 3-79, RIL (2014)	AD_ch11_At.11	N/A	108.1	BNL2895b	View
24	Monsanto SSR Bin Map, (2009)	AD_ch11_At.11	N/A	101	BNL2895b	View
25	Guazuncho-2 x VH8-4602, BC1 (2005)	AD_ch21_Dt.11	N/A	109.5	BNL2895a	View
26	Handan-208 x Pima-90, F2:3 (2007)	AD_ch18_Dt.13	N/A	98.1	BNL2895a	View
27	TM-1 x 3-79, RIL (2012)	AD_ch21_Dt.11	N/A	91.36	BNL2895a	View
28	TM-1 x 3-79, RIL (2014)	AD_ch21_Dt.11	N/A	93.2	BNL2895a	View
29	Monsanto SSR Bin Map, (2009)	AD_ch21_Dt.11	N/A	101	BNL2895a	View
30	TM-1 x Hai-7124, BC1 (2007)	AD_ch11_At.11	N/A	74.6	BNL2895-215	View
31	TM-1 x Hai-7124, BC1 (2007)	AD_ch21_Dt.11	N/A	78.9	BNL2895-215	View
32	Vsg x (TM-1 x Hai-7124), DH (2005)	AD_ch21_Dt.11	N/A	215.5	BNL2895-215	View
33	TM-1 x Hai-7124, BC1 (2008)	AD_ch21_Dt.11	N/A	72.55	BNL2895-215	View
34	Vsg x (TM-1 x Hai-7124), DH (2005)	AD_ch11_At.11	N/A	74.9	BNL2895-215	View
35	TM-1 x Hai-7124, BC1 (2012)	AD_ch21_Dt.11	N/A	107.1	BNL2895-215	View
36	TM-1 x Hai-7124, BC1 (2008)	AD_ch11_At.11	N/A	73.21	BNL2895-216	View
37	TM-1 x Hai-7124, BC1 (2012)	AD_ch11_At.11	N/A	88.8	BNL2895-216	View
38	Yumian-1 x T586, RIL (2009)	AD_ch11_At.11	N/A	43.6	BNL2895/210y(C11,C21)	View
39	Yumian-1 x T586, F2:3 (2005.v0)	AD_chU	N/A	4.1	BNL2895(C5,C18,A03,D02)	View
40	TM-1 x 3-79, RIL (2012.v3)	AD_ch11_At.11	N/A	108.08	BNL2895b	View
41	TM-1 x 3-79, RIL (2012.v3)	AD_ch21_Dt.11	N/A	93.18	BNL2895a	View

Sequence

>BNL2895 ID=BNL2895; Name=BNL2895; organism=Gossypium hirsutum; type=genetic_marker; length=207bp
CGATTTTACTGCTTCAGACTTGAGAGAGAGAGAGAGAGAGAGGCAATATT
TAAGATTTCCCACGGGTTTGGCTTTGGAATGAAGTTACTTATTAGCTTTT
GTCTTCTTCTTCTTCTTTTTTTTTTTTATTAGATACGTGTTTTGCTTGTT
ATATTTGTACCTGTGGACACCTCTCTACAAAAATAAATGTGGATCCGTGA
GATGGTA

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BNL2895, BNL2895 (genetic_marker) Gossypium hirsutum