BNL2877, BNL2877 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL2877
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL2877_orig
Source Typegenomic
Repeat Motif(TC)10
PCR ConditionAnnealing temperature: 55
Primer 1BNL2877_F: TCGATCCCTTTTCTCTCTCTCTC
Primer 2BNL2877_R: TTGACTCGGCAGATTGACAAA
PolymorphismP_ BNL2877
CommentPrimer data obtained in 2000
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A02chromosomeA02:558720..558833 +
CM018216.1chromosomeCM018216.1:518015..518137 +
CM018203.1chromosomeCM018203.1:494145..494264 +
D5_03chromosomeD5_03:62470353..62470473 -
KI_03chromosomeKI_03:502518..502629 +
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:520627..520740 +
D10_03chromosomeD10_03:61689889..61690006 +
scaffold171.1supercontigscaffold171.1:1517403..1517522 -
A02chromosomeA02:517810..517923 +
Ghir_A02chromosomeGhir_A02:539378..539491 +
A02chromosomeA02:543222..543335 +
A02chromosomeA02:517363..517482 +
A02chromosomeA02:534942..535057 +
At02chromosomeAt02:460399..460518 +
scaffold22943supercontigscaffold22943:80649..80768 +
scaffold13091supercontigscaffold13091:4904..5026 -
Gbar_D02chromosomeGbar_D02:525685..525807 +
Gbar_A02chromosomeGbar_A02:426587..426706 +
D02chromosomeD02:516880..516994 +
A02chromosomeA02:465022..465141 +
CM017611.1chromosomeCM017611.1:512386..512499 +
CM017637.1chromosomeCM017637.1:538121..538232 +
CM017702.1chromosomeCM017702.1:334232..334340 +
CM017689.1chromosomeCM017689.1:478324..478443 +
A02chromosomeA02:527320..527433 +
Chr03chromosomeChr03:132080434..132080555 -
Chr03chromosomeChr03:130356572..130356685 -
Chr03chromosomeChr03:559495..559613 +
B_03chromosomeB_03:106536028..106536135 -
Chr05chromosomeChr05:579425..579544 +
chr05chromosomechr05:538040..538146 +
Chr_05chromosomeChr_05:622466..622814 +
Chr05chromosomeChr05:607341..607447 +
Chr05chromosomeChr05:492442..492551 +
E03chromosomeE03:626278..626385 +
F03chromosomeF03:613370..613483 +
Chr03chromosomeChr03:205039419..205039527 -
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL2877_origBNL2877_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch02_At.02N/A2.86BNL2877View
2Xinluzao-1 x Hai-7124, F2 (2008)AD_ch02_At.02N/A0BNL2877View
3AD-genome wide Reference Map (2009)AD_ch02_At.02N/A183BNL2877View
4W10 x TM-1, F2:3 (2015)AD_ch02_At.02N/A45.3BNL2877View
5GX1135 x GX100-2, F2 (2013)AD_ch11_At.11N/A70.9BNL2877View
6GX1135 x GX100-2, RIL (2015)AD_ch02_At.02N/A0BNL2877View
7GX1135 x GX100-2, RIL (2016)AD_ch02_At.02N/A0BNL2877View
8Monsanto SSR Bin Map, (2009)AD_ch02_At.02N/A81BNL2877View
9HS-46 x MARCABUCAG8US-1-88, RIL (2009)AD_ch02_At.02N/A26BNL2877-110View
10PD 94042 x (AD)4-08, F2 (2016)AD_ch02_At.02N/A71.4BNL2877View
Sequence
>BNL2877 ID=BNL2877; Name=BNL2877; organism=Gossypium hirsutum; type=genetic_marker; length=114bp
TCGATCCCTTTTCTCTCTCTCTCTCTCTCTCTTTTTGTTTTGGATTGTAG
GGTTTTCATTCGTCGCTAAAGTTTTTTATGTTGGAAGTTGAAATTTGTCA
ATCTGCCGAGTCAA