|
|
Marker Overview
| Name | BNL2827 |
|---|
| Genbank ID | N/A |
|---|
| Type | SSR |
|---|
| Species | Gossypium hirsutum |
|---|
| Germplasm | Deltapine 90 |
|---|
| Source Sequence | BNL2827_orig
|
|---|
| Source Type | genomic |
|---|
| Repeat Motif | (GA)10 |
|---|
| PCR Condition | Annealing temperature: 55 |
|---|
| Primer 1 | BNL2827_F: ATCGCGGGCATTAATGAATA |
|---|
| Primer 2 | BNL2827_R: AATACATCCGCTCATTTCGC |
|---|
| Comment | Primer data obtained in 2000 |
|---|
Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Map Positions
| # | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
|---|
| 1 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch01_At.01 | N/A | 50.1 | BNL2827* | View |
| 2 | AD-genome wide Reference Map (2009) | AD_ch01_At.01 | N/A | 63 | BNL2827 | View |
| 3 | TM-1 x 3-79, RIL (2012) | AD_ch01_At.01 | N/A | 54.23 | BNL2827 | View |
| 4 | Xinluzao-1 x Hai-7124, F2 (2008) | AD_ch01_At.01 | N/A | 12.6 | BNL2827 | View |
| 5 | Yumian-1 x T586, RIL (2006) | AD_ch15_Dt.01 | N/A | 29.2 | BNL2827 | View |
| 6 | (YM1 x CCRI35) x (YM1 x 7235), 4WC (2012) | AD_ch15_Dt.01 | N/A | 126.2 | BNL2827 | View |
| 7 | DH962 x Jinmian-6, F2 (2009) | AD_ch15_Dt.01 | N/A | 37.4 | BNL2827 | View |
| 8 | DH962 x Jinmian-6, F2 (2009) | AD_ch15_Dt.01 | N/A | 37.4 | BNL2827 | View |
| 9 | Yumian-1 x T586, RIL (2015) | AD_ch15_Dt.01 | N/A | 50.2 | BNL2827 | View |
| 10 | DH962 X Ji Mian 5, F2 (2015) | AD_ch01_At.01 | N/A | 43.84 | BNL2827 | View |
| 11 | DH962 X Ji Mian 5, F2 (2015) | AD_ch15_Dt.01 | N/A | 43.84 | BNL2827 | View |
| 12 | TM-1 x 3-79, RIL (2014) | AD_ch01_At.01 | N/A | 90.1 | BNL2827 | View |
| 13 | GX1135 x GX100-2, F2 (2013) | AD_ch01_At.01 | N/A | 48.2 | BNL2827 | View |
| 14 | DH962 x Ji Mian 5, RIL (2015) | AD_ch15_Dt.01 | N/A | 43.2 | BNL2827 | View |
| 15 | Monsanto SSR Bin Map, (2009) | AD_ch01_At.01 | N/A | 101 | BNL2827 | View |
| 16 | Yumian-1 x T586, RIL (2009) | AD_ch15_Dt.01 | N/A | 29.2 | BNL2827/120t(C1) | View |
| 17 | GX1135 x GX100-2, RIL (2016) | AD_ch01_At.01 | N/A | 103.1 | BNL2827b | View |
| 18 | GX1135 x GX100-2, RIL (2016) | AD_ch01_At.01 | N/A | 103.8 | BNL2827a | View |
| 19 | CCRI-35 x Yumian-1, RIL (2017) | AD_ch15_Dt.01 | N/A | 50.91 | BNL2827 | View |
| 20 | TM-1 x 3-79, RIL (2012.v3) | AD_ch01_At.01 | N/A | 90.15 | BNL2827 | View |
Sequence
>BNL2827 ID=BNL2827; Name=BNL2827; organism=Gossypium hirsutum; type=genetic_marker; length=179bp
ATCGCGGGCATTAATGAATACAGAACAAAGACATGATGACTCTGCTTACT
AAGTATTCACAAGCCCACAACAAACGCGCTAAGTAATTGTATGAAAGAGT
GCGAGAGAGAGAGAGAGAGAGACCTTGACAATGTTAACGGGAATGTTCTC
CCCAGTTTGGCGAAATGAGCGGATGTATT
|
