BNL2664, BNL2664 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL2664
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL2664_orig
Source Typegenomic
Repeat Motif(CT)10
PCR ConditionAnnealing temperature: 55
Primer 1BNL2664_F: ATCAAAGCGAAGCGAACAGT
Primer 2BNL2664_R: TGAAGGAACGGAAGAGAGGA
PolymorphismP_ BNL2664
CommentPrimer data obtained in 2000
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D01chromosomeD01:3979737..3979861 -
A01chromosomeA01:5296261..5296388 -
CM018202.1chromosomeCM018202.1:4444818..4444945 -
KI_01chromosomeKI_01:3359753..3359891 -
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:4741125..4741250 -
CM016614.1chromosomeCM016614.1:5689690..5689814 -
scaffold235.1supercontigscaffold235.1:1199179..1199303 +
scaffold878.1supercontigscaffold878.1:559220..559347 -
D01chromosomeD01:3791804..3791928 -
A01chromosomeA01:4145638..4145765 -
Ghir_D01chromosomeGhir_D01:4339958..4340082 -
Ghir_A01chromosomeGhir_A01:4605191..4605318 -
D01chromosomeD01:4073827..4073951 -
A01chromosomeA01:4363432..4363559 -
D01chromosomeD01:4068114..4068238 -
A01chromosomeA01:4605390..4605517 -
D01chromosomeD01:4195708..4195832 -
A01chromosomeA01:4552158..4552285 -
Dt01chromosomeDt01:3819751..3819867 -
scaffold3243supercontigscaffold3243:160161..160288 +
scaffold4369supercontigscaffold4369:299682..299798 -
Scaffold1575supercontigScaffold1575:20710..20837 +
Gbar_D01chromosomeGbar_D01:4400283..4400399 -
A01chromosomeA01:4387175..4387302 -
CM017623.1chromosomeCM017623.1:4297038..4297162 -
CM017610.1chromosomeCM017610.1:5060451..5060576 -
CM017649.1chromosomeCM017649.1:4374616..4374740 -
CM017636.1chromosomeCM017636.1:4440706..4440831 -
CM017688.1chromosomeCM017688.1:4493540..4493667 -
D01chromosomeD01:4396683..4396807 +
D01chromosomeD01:4451998..4452120 -
A01chromosomeA01:4582644..4582771 -
Chr01chromosomeChr01:4451910..4452035 -
Chr01chromosomeChr01:4715447..4715572 -
Chr02chromosomeChr02:4083120..4083250 -
Chr_02chromosomeChr_02:3443082..3443283 -
Chr02chromosomeChr02:4263121..4263249 -
Chr02chromosomeChr02:3814153..3814277 -
Chr02chromosomeChr02:3855285..3855496 -
E01chromosomeE01:5736793..5736917 -
F01chromosomeF01:4085194..4085318 -
Chr01chromosomeChr01:194374355..194374478 +
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL2664_origBNL2664_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Handan-208 x Pima-90, F2:3 (2007)AD_ch15_Dt.01N/A102.8BNL2664*View
2TM-1 x Hai-7124, BC1 (2008)AD_ch15_Dt.01N/A27.59BNL2664-195View
3TM-1 x Hai-7124, BC1 (2012)AD_ch15_Dt.01N/A97BNL2664-195View
4TM-1 x Hai-7124, BC1 (2008)AD_ch22_Dt.04N/A59.85BNL2664-210View
5TM-1 x Hai-7124, BC1 (2012)AD_ch22_Dt.04N/A69.6BNL2664-210View
Sequence
>BNL2664 ID=BNL2664; Name=BNL2664; organism=Gossypium hirsutum; type=genetic_marker; length=128bp
ATCAAAGCGAAGCGAACAGTCTCCTCCGGCCATAGCCATTACTCTCTCTC
TCTCTCTCTCTCCCCCGCCAAAAGAAAAAGCCTTTTTGATTCTCTCCTAT
AAATACCCTCCTCTCTTCCGTTCCTTCA