BNL2662, BNL2662 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL2662
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL2662_orig
Source Typegenomic
Repeat Motif(CT)15
PCR ConditionAnnealing temperature: 55
Primer 1BNL2662_F: TACAACAGACCGCATCACAGTG
Primer 2BNL2662_R: TCGAGGTACTCTCTCTCTCTCTCTC
PolymorphismP_ BNL2662
CommentPrimer data obtained in 2000
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D11chromosomeD11:65886042..65886128 +
D10_11chromosomeD10_11:63147279..63147365 -
D11chromosomeD11:59769305..59769391 +
Ghir_D11chromosomeGhir_D11:66713749..66713835 -
D11chromosomeD11:65561525..65561611 -
D11chromosomeD11:63457243..63457329 -
Dt11chromosomeDt11:62334188..62334256 +
scaffold31745supercontigscaffold31745:6973..7041 +
Gbar_D11chromosomeGbar_D11:63498723..63498791 -
CM017633.1chromosomeCM017633.1:65643715..65643797 -
CM017659.1chromosomeCM017659.1:67627564..67627646 -
D11chromosomeD11:66608904..66608990 -
B_11chromosomeB_11:95567207..95567288 -
Chr07chromosomeChr07:64392370..64392450 -
chr07chromosomechr07:46120292..46120376 -
Chr_07chromosomeChr_07:44518762..44518842 -
Chr07chromosomeChr07:65784843..65784923 -
Chr07chromosomeChr07:40793870..40793956 -
Chr07chromosomeBNL2662:1..294 .
Chr07:56143040..56143323 -
Chr7chromosomeBNL2662:1..294 .
Chr7:5702632..5702915 +
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL2662_origBNL2662_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch05_At.05N/A170.4BNL2662View
2Guazuncho-2 x VH8-4602, consensus (2009)AD_ch05_At.05N/A52.85BNL2662View
3AD-genome wide Reference Map (2009)AD_ch05_At.05N/A167BNL2662View
4Xinluzao-1 x Hai-7124, F2 (2008)AD_chUN/A198BNL2662View
5Yumian-1 x T586, F2:3 (2005)AD_ch05_At.05N/A0BNL2662View
6TM-1 x 3-79, RIL (2012)AD_ch21_Dt.11N/A117.7BNL2662View
7Yumian-1 x T586, RIL (2006)AD_ch21_Dt.11N/A7.6BNL2662View
8Yumian-1 x T586, RIL (2015)AD_ch21_Dt.11N/A151.6BNL2662View
9TM-1 x 3-79, RIL (2014)AD_ch21_Dt.11N/A125.1BNL2662View
10W10 x TM-1, F2:3 (2015)AD_ch21_Dt.11N/A20.2BNL2662View
11Monsanto SSR Bin Map, (2009)AD_ch21_Dt.11N/A141BNL2662View
12Yumian-1 x T586, RIL (2009)AD_ch21_Dt.11N/A7.1BNL2662/90t(C5)View
13Yumian-1 x T586, F2:3 (2005.v0)AD_ch05_At.05N/A0BNL2662(C5)View
14TM-1 x 3-79, RIL (2012.v3)AD_ch21_Dt.11N/A125.06BNL2662View
Sequence
>BNL2662 ID=BNL2662; Name=BNL2662; organism=Gossypium hirsutum; type=genetic_marker; length=87bp
TACAACAGACCGCATCACAGTGAAAGGCATGTCCAATGGATGTGTCATTA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGTACCTCGA