BNL2652, BNL2652 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL2652
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL2652_orig
Source Typegenomic
Repeat Motif(TC)32
PCR ConditionAnnealing temperature: 55
Primer 1BNL2652_F: TTCATCATTCTAGCCTGAGTCC
Primer 2BNL2652_R: GCGATAATCCTTCCAGGGAT
PolymorphismP_ BNL2652
CommentPrimer data obtained in 2000
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL2652_origBNL2652_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI-36 x Hai-7124, F2 (2007)AD_ch18_Dt.13N/A77BNL2652View
2Guazuncho-2 x VH8-4602, consensus (2009)AD_ch13_At.13N/A94.51BNL2652View
3Guazuncho-2 x VH8-4602, consensus (2009)AD_ch18_Dt.13N/A90.97BNL2652View
4Guazuncho-2 x VH8-4602, RIL (2009)AD_ch13_At.13N/A41.51BNL2652View
5Handan-208 x Pima-90, F2:3 (2007)AD_ch13_At.13N/A32BNL2652View
6AD-genome wide Reference Map (2009)AD_ch18_Dt.13N/A47BNL2652View
7TM-1 x 3-79, RIL (2006)AD_ch18_Dt.13N/A101.9BNL2652View
8TM-1 x 3-79, RIL (2012)AD_ch18_Dt.13N/A38.29BNL2652View
9Xinluzao-1 x Hai-7124, F2 (2008)AD_ch18_Dt.13N/A86BNL2652View
10Emian-22 x 3-79, BC1 (2011)AD_ch18_Dt.13N/A91.41BNL2652View
11Guazuncho-2 x VH8-4602, RIL (2009)AD_ch18_Dt.13N/A70.59BNL2652View
12AD-genome wide Reference Map (2009)AD_ch13_At.13N/A156BNL2652View
13H18 x 3-79, F2 (2005)AD_ch18_Dt.13N/A37.2BNL2652View
14H18 x TM-1, F2 (2005)AD_ch13_At.13N/A64.2BNL2652View
15TM-1 x 3-79, RIL (2014)AD_ch18_Dt.13N/A39.5BNL2652View
16TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch18_Dt.13N/A30.6BNL2652View
17CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch13_At.13N/A97.1BNL2652View
18CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch18_Dt.13N/A45.3BNL2652View
19Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch13_At.13N/A149.7BNL2652bView
20Handan-208 x Pima-90, F2:3 (2007)AD_ch13_At.13N/A32.4BNL2652bView
21Palmeri x K-101, F2 (2007)AD_ch18_Dt.13N/A48.9BNL2652bView
22SG 747 x Giza 75, BIL (2013)AD_ch13_At.13N/A44.4BNL2652bView
23Monsanto SSR Bin Map, (2009)AD_ch18_Dt.13N/A81BNL2652bView
24Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch18_Dt.13N/A109.7BNL2652aView
25Palmeri x K-101, F2 (2007)AD_ch13_At.13N/A100.9BNL2652aView
26SG 747 x Giza 75, BIL (2013)AD_ch18_Dt.13N/A62.9BNL2652aView
27Monsanto SSR Bin Map, (2009)AD_ch13_At.13N/A81BNL2652aView
28Handan-208 x Pima-90, F2:3 (2007)AD_ch18_Dt.13N/A0BNL2652cView
29Handan-208 x Pima-90, F2:3 (2007)AD_ch18_Dt.13N/A22.1BNL2652dView
30TM-1 x Hai-7124, BC1 (2007)AD_ch13_At.13N/A69.4BNL2652-190View
31TM-1 x Hai-7124, BC1 (2008)AD_ch13_At.13N/A69.3BNL2652-190View
32TM-1 x Hai-7124, BC1 (2012)AD_ch13_At.13N/A68BNL2652-190View
33Vsg x (TM-1 x Hai-7124), DH (2005)AD_ch18_Dt.13N/A63.5BNL2652-195View
34TM-1 x Hai-7124, BC1 (2007)AD_ch18_Dt.13N/A73.9BNL2652-195View
35TM-1 x Hai-7124, BC1 (2008)AD_ch18_Dt.13N/A74.41BNL2652-195View
36TM-1 x Hai-7124, BC1 (2012)AD_ch18_Dt.13N/A46.1BNL2652-195View
37TM-1 x 3-79, RIL (2012.v3)AD_ch18_Dt.13N/A39.5BNL2652View
38PD 94042 x (AD)4-08, F2 (2016)AD_ch13_At.13N/A105.3BNL2652aView
39PD 94042 x (AD)4-08, F2 (2016)AD_ch18_Dt.13N/A185.5BNL2652bView
Sequence
>BNL2652 ID=BNL2652; Name=BNL2652; organism=Gossypium hirsutum; type=genetic_marker; length=225bp
TTCATCATTCTAGCCTGAGTCCTTCCANCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGTAGATATG
TTTTCTTGCACACATAAGACAACAAGTATACCTTTGATCAAGGTTGTTAG
TGGTACGATAAGATAATAACTGATAGTTTTCCAATAACTACCTTACCGGN
TCCTTATCCCTGGAAGGATTATCGC