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Marker Overview
Name | BNL2652 |
Genbank ID | N/A |
Type | SSR |
Species | Gossypium hirsutum |
Germplasm | Deltapine 90 |
Source Sequence | BNL2652_orig
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Source Type | genomic |
Repeat Motif | (TC)32 |
PCR Condition | Annealing temperature: 55 |
Primer 1 | BNL2652_F: TTCATCATTCTAGCCTGAGTCC |
Primer 2 | BNL2652_R: GCGATAATCCTTCCAGGGAT |
Polymorphism | P_ BNL2652 |
Comment | Primer data obtained in 2000 |
Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Map Positions
# | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
1 | CCRI-36 x Hai-7124, F2 (2007) | AD_ch18_Dt.13 | N/A | 77 | BNL2652 | View |
2 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch13_At.13 | N/A | 94.51 | BNL2652 | View |
3 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch18_Dt.13 | N/A | 90.97 | BNL2652 | View |
4 | Guazuncho-2 x VH8-4602, RIL (2009) | AD_ch13_At.13 | N/A | 41.51 | BNL2652 | View |
5 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch13_At.13 | N/A | 32 | BNL2652 | View |
6 | AD-genome wide Reference Map (2009) | AD_ch18_Dt.13 | N/A | 47 | BNL2652 | View |
7 | TM-1 x 3-79, RIL (2006) | AD_ch18_Dt.13 | N/A | 101.9 | BNL2652 | View |
8 | TM-1 x 3-79, RIL (2012) | AD_ch18_Dt.13 | N/A | 38.29 | BNL2652 | View |
9 | Xinluzao-1 x Hai-7124, F2 (2008) | AD_ch18_Dt.13 | N/A | 86 | BNL2652 | View |
10 | Emian-22 x 3-79, BC1 (2011) | AD_ch18_Dt.13 | N/A | 91.41 | BNL2652 | View |
11 | Guazuncho-2 x VH8-4602, RIL (2009) | AD_ch18_Dt.13 | N/A | 70.59 | BNL2652 | View |
12 | AD-genome wide Reference Map (2009) | AD_ch13_At.13 | N/A | 156 | BNL2652 | View |
13 | H18 x 3-79, F2 (2005) | AD_ch18_Dt.13 | N/A | 37.2 | BNL2652 | View |
14 | H18 x TM-1, F2 (2005) | AD_ch13_At.13 | N/A | 64.2 | BNL2652 | View |
15 | TM-1 x 3-79, RIL (2014) | AD_ch18_Dt.13 | N/A | 39.5 | BNL2652 | View |
16 | TM-1 x (TX-0256 + TX-1046), CSIL (2016) | AD_ch18_Dt.13 | N/A | 30.6 | BNL2652 | View |
17 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch13_At.13 | N/A | 97.1 | BNL2652 | View |
18 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch18_Dt.13 | N/A | 45.3 | BNL2652 | View |
19 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch13_At.13 | N/A | 149.7 | BNL2652b | View |
20 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch13_At.13 | N/A | 32.4 | BNL2652b | View |
21 | Palmeri x K-101, F2 (2007) | AD_ch18_Dt.13 | N/A | 48.9 | BNL2652b | View |
22 | SG 747 x Giza 75, BIL (2013) | AD_ch13_At.13 | N/A | 44.4 | BNL2652b | View |
23 | Monsanto SSR Bin Map, (2009) | AD_ch18_Dt.13 | N/A | 81 | BNL2652b | View |
24 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch18_Dt.13 | N/A | 109.7 | BNL2652a | View |
25 | Palmeri x K-101, F2 (2007) | AD_ch13_At.13 | N/A | 100.9 | BNL2652a | View |
26 | SG 747 x Giza 75, BIL (2013) | AD_ch18_Dt.13 | N/A | 62.9 | BNL2652a | View |
27 | Monsanto SSR Bin Map, (2009) | AD_ch13_At.13 | N/A | 81 | BNL2652a | View |
28 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch18_Dt.13 | N/A | 0 | BNL2652c | View |
29 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch18_Dt.13 | N/A | 22.1 | BNL2652d | View |
30 | TM-1 x Hai-7124, BC1 (2007) | AD_ch13_At.13 | N/A | 69.4 | BNL2652-190 | View |
31 | TM-1 x Hai-7124, BC1 (2008) | AD_ch13_At.13 | N/A | 69.3 | BNL2652-190 | View |
32 | TM-1 x Hai-7124, BC1 (2012) | AD_ch13_At.13 | N/A | 68 | BNL2652-190 | View |
33 | Vsg x (TM-1 x Hai-7124), DH (2005) | AD_ch18_Dt.13 | N/A | 63.5 | BNL2652-195 | View |
34 | TM-1 x Hai-7124, BC1 (2007) | AD_ch18_Dt.13 | N/A | 73.9 | BNL2652-195 | View |
35 | TM-1 x Hai-7124, BC1 (2008) | AD_ch18_Dt.13 | N/A | 74.41 | BNL2652-195 | View |
36 | TM-1 x Hai-7124, BC1 (2012) | AD_ch18_Dt.13 | N/A | 46.1 | BNL2652-195 | View |
37 | TM-1 x 3-79, RIL (2012.v3) | AD_ch18_Dt.13 | N/A | 39.5 | BNL2652 | View |
38 | PD 94042 x (AD)4-08, F2 (2016) | AD_ch13_At.13 | N/A | 105.3 | BNL2652a | View |
39 | PD 94042 x (AD)4-08, F2 (2016) | AD_ch18_Dt.13 | N/A | 185.5 | BNL2652b | View |
Sequence
>BNL2652 ID=BNL2652; Name=BNL2652; organism=Gossypium hirsutum; type=genetic_marker; length=225bp TTCATCATTCTAGCCTGAGTCCTTCCANCTCTCTCTCTCTCTCTCTCTCT CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGTAGATATG TTTTCTTGCACACATAAGACAACAAGTATACCTTTGATCAAGGTTGTTAG TGGTACGATAAGATAATAACTGATAGTTTTCCAATAACTACCTTACCGGN TCCTTATCCCTGGAAGGATTATCGC
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