BNL2634, BNL2634 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL2634
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL2634_orig
Source Typegenomic
Repeat Motif(AG)11
PCR ConditionAnnealing temperature: 55
Primer 1BNL2634_F: AACAACATTGAAAGTCGGGG
Primer 2BNL2634_R: CCCAGCTGCTTATTGGTTTC
PolymorphismP_ BNL2634
CommentPrimer data obtained in 2000
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D07chromosomeD07:9087423..9087683 +
A07chromosomeA07:9954839..9955034 +
A07chromosomeA07:9942497..9942718 +
CM018221.1chromosomeCM018221.1:8629669..8629928 +
CM018208.1chromosomeCM018208.1:10165301..10165495 +
D5_07chromosomeD5_07:8552628..8552884 +
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:10248683..10248932 +
scaffold957.1supercontigscaffold957.1:341210..341405 +
Dt_chr1chromosomeDt_chr1:38745253..38745501 -
D07chromosomeD07:8693568..8693828 +
A07chromosomeA07:9292446..9292641 +
A07chromosomeA07:9280178..9280399 +
Ghir_D07chromosomeGhir_D07:8939325..8939585 +
Ghir_A07chromosomeGhir_A07:10260045..10260240 +
Ghir_A07chromosomeGhir_A07:10247716..10247936 +
D07chromosomeD07:8579421..8579681 +
A07chromosomeA07:9727610..9727805 +
A07chromosomeA07:9715361..9715582 +
D07chromosomeD07:8866712..8866960 +
A07chromosomeA07:10225502..10225697 +
A07chromosomeA07:10213163..10213384 +
D07chromosomeD07:8765930..8766190 +
A07chromosomeA07:10296793..10296990 +
scaffold24071supercontigscaffold24071:94539..94798 +
scaffold20528supercontigscaffold20528:37307..37501 -
scaffold20528supercontigscaffold20528:54051..54277 -
Gbar_D07chromosomeGbar_D07:8959610..8959869 +
Gbar_A07chromosomeGbar_A07:10115851..10116045 +
D07chromosomeD07:8756869..8757128 +
A07chromosomeA07:9896876..9897070 +
CM017629.1chromosomeCM017629.1:9052682..9052942 +
CM017616.1chromosomeCM017616.1:9893330..9893521 +
CM017616.1chromosomeCM017616.1:9881004..9881244 +
CM017655.1chromosomeCM017655.1:9072376..9072633 +
CM017642.1chromosomeCM017642.1:10172044..10172240 +
CM017642.1chromosomeCM017642.1:10159662..10159900 +
CM017707.1chromosomeCM017707.1:8879420..8879679 +
CM017694.1chromosomeCM017694.1:10031111..10031306 +
CM017694.1chromosomeCM017694.1:10018752..10018980 +
D07chromosomeD07:9026213..9026473 +
A07chromosomeA07:10319337..10319532 +
A07chromosomeA07:10306995..10307216 +
Chr07chromosomeChr07:10439374..10439584 +
Chr07chromosomeChr07:10335844..10336095 +
Chr07chromosomeChr07:45012570..45012826 -
Chr01chromosomeChr01:7215483..7215741 +
Chr01chromosomeChr01:7420640..7420900 +
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL2634_origBNL2634_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Xinluzao-1 x Hai-7124, F2 (2008)AD_ch16_Dt.07N/A76.3BNL2634View
2CCRI-36 x Hai-7124, F2 (2007)AD_ch16_Dt.07N/A80.4BNL2634View
3AD-genome wide Reference Map (2009)AD_ch16_Dt.07N/A65BNL2634View
4(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch16_Dt.07N/A31.8BNL2634View
5PD6992 x SM3, F2:3 (2005)AD_ch16_Dt.07N/A0BNL2634View
6Yumian-1 x 7235, RIL (2015)AD_ch16_Dt.07N/A48BNL2634View
7W10 x TM-1, F2:3 (2015)AD_ch16_Dt.07N/A15.5BNL2634View
8SG 747 x Giza 75, BIL (2013)AD_ch16_Dt.07N/A72.4BNL2634View
9HS-46 x MARCABUCAG8US-1-88, RIL (2009)AD_ch07_At.07N/A42BNL2634-194View
10Monsanto SSR Bin Map, (2009)AD_ch07_At.07N/A61BNL2634aView
11TM-1 x 3-79, RIL (2012)AD_ch16_Dt.07N/A41.55BNL2634bView
12TM-1 x 3-79, RIL (2014)AD_ch16_Dt.07N/A84.2BNL2634bView
13Monsanto SSR Bin Map, (2009)AD_ch16_Dt.07N/A141BNL2634bView
14TM-1 x 3-79, RIL (2012.v3)AD_ch16_Dt.07N/A84.24BNL2634bView
15PD 94042 x (AD)4-08, F2 (2016)AD_ch07_At.07N/A183.2BNL2634View
Sequence
>BNL2634 ID=BNL2634; Name=BNL2634; organism=Gossypium hirsutum; type=genetic_marker; length=196bp
AACAACATTGAAAGTCGGGGAGGGACATTAATGATTGGAAGAGAGAGAGA
GAGAGAGAGAGCCATAGNNNGGTTTGAAATCACATTGAACGCCTTATTGC
AAGATGTTGGCCCGTGACTTTTGAAAGTTGTTTATTATAAAACCATGACT
TTTTTTTTTGATTAGTGGTTTATAATGAAACCAATAAGCAGCTGGG