BNL2616, BNL2616 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL2616
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL2616_orig
Source Typegenomic
Repeat Motif(AG)17
PCR ConditionAnnealing temperature: 55
Primer 1BNL2616_F: CCTTCCTTGTCTGCCTGATC
Primer 2BNL2616_R: TTGAAGAAAAACCTAAACATCTCC
PolymorphismP_ BNL2616
CommentPrimer data obtained in 2000
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D08chromosomeD08:54133491..54133638 +
CM018222.1chromosomeCM018222.1:50824688..50824829 +
D5_08chromosomeD5_08:47006621..47006760 +
D10_08chromosomeD10_08:14032815..14032952 -
CM016621.1chromosomeCM016621.1:32191288..32191445 +
Dt_chr10chromosomeDt_chr10:7997162..7997309 -
D08chromosomeD08:50810313..50810460 +
scaffold15105supercontigscaffold15105:2063..2210 -
Ghir_D08chromosomeGhir_D08:53430264..53430411 +
Ghir_A08chromosomeGhir_A08:103971609..103971736 +
D08chromosomeD08:54289724..54289871 +
D08chromosomeD08:53324671..53324814 +
D08chromosomeD08:50615119..50615266 +
Dt08chromosomeDt08:52224696..52224837 +
At08chromosomeAt08:89561308..89561435 +
At08chromosomeAt08:89557695..89557824 +
scaffold5573supercontigscaffold5573:379493..379634 +
scaffold3020supercontigscaffold3020:539668..539795 +
scaffold3020supercontigscaffold3020:536055..536184 +
Gbar_D08chromosomeGbar_D08:50788732..50788873 +
Gbar_A08chromosomeGbar_A08:100797641..100797770 +
D08chromosomeD08:52873902..52874043 +
CM017630.1chromosomeCM017630.1:52228096..52228259 +
CM017656.1chromosomeCM017656.1:54156935..54157110 +
CM017708.1chromosomeCM017708.1:51419323..51419484 +
D08chromosomeD08:53931132..53931279 +
Chr08chromosomeChr08:47903687..47903828 +
B_08chromosomeB_08:84945181..84945340 +
Chr04chromosomeChr04:49282453..49282586 +
chr04chromosomechr04:36695889..36696122 +
Chr_04chromosomeChr_04:33269688..33269899 +
Chr04chromosomeChr04:32393756..32393895 +
Chr04chromosomeChr04:32602374..32602610 +
Chr04chromosomeBNL2616:4..499 .
Chr04:47618634..47619110 +
Chr4chromosomeBNL2616:4..499 .
Chr4:7801489..7801963 +
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL2616_origBNL2616_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch24_Dt.08N/A47.96BNL2616View
2Xinluzao-1 x Hai-7124, F2 (2008)AD_ch24_Dt.08N/A139.1BNL2616View
3CCRI-36 x Hai-7124, F2 (2007)AD_ch24_Dt.08N/A124.7BNL2616View
4AD-genome wide Reference Map (2009)AD_ch24_Dt.08N/A172BNL2616View
5(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch24_Dt.08N/A38BNL2616View
6Yumian-1 x 7235, RIL (2015)AD_ch24_Dt.08N/A47.5BNL2616View
7CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch24_Dt.08N/A77.2BNL2616View
8Monsanto SSR Bin Map, (2009)AD_ch24_Dt.08N/A61BNL2616View
9PD 94042 x (AD)4-08, F2 (2016)AD_ch24_Dt.08N/A41.5BNL2616View
Sequence
>BNL2616 ID=BNL2616; Name=BNL2616; organism=Gossypium hirsutum; type=genetic_marker; length=148bp
CCTTCCTTGTCTGCCTGATCATGTGTAGAGTTTGTATTGCAACACCCCTT
TCCCTAGTTGATTGATATATATATATATACACACTCACGTAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGGGAGATGTTTAGGTTTTTCTTCAA