BNL2471, BNL2471 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL2471
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL2471_orig
Source Typegenomic
Repeat Motif(AG)12
PCR ConditionAnnealing temperature: 55
Primer 1BNL2471_F: GGGTTCATCGTGGAAGAGAA
Primer 2BNL2471_R: GCCGGGATTTACACAAAATT
PolymorphismP_ BNL2471
CommentPrimer data obtained in 2000
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D03chromosomeD03:14284962..14285159 +
CM018217.1chromosomeCM018217.1:18114516..18114709 -
Dt_chr3chromosomeDt_chr3:41380779..41380977 -
scaffold3920_D03supercontigscaffold3920_D03:1182550..1182748 +
Ghir_D03chromosomeGhir_D03:17241170..17241368 +
D03chromosomeD03:18049923..18050121 +
D03chromosomeD03:18187782..18187980 +
D03chromosomeD03:17019721..17019919 +
scaffold16686supercontigscaffold16686:164073..164266 +
Gbar_D03chromosomeGbar_D03:18125223..18125416 -
D03chromosomeD03:18048900..18049093 +
CM017625.1chromosomeCM017625.1:18144250..18144442 -
CM017651.1chromosomeCM017651.1:18801841..18802036 -
CM017703.1chromosomeCM017703.1:18302033..18302226 -
D03chromosomeD03:18683337..18683535 -
Chr03chromosomeChr03:17888539..17888739 -
chr13chromosomechr13:18080114..18080310 +
Chr13chromosomeBNL2471:1..240 .
Chr13:22721902..22722137 +
scaffold178supercontigBNL2471:1..240 .
scaffold178:789759..789994 +
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL2471_origBNL2471_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
13-79 x NM24016, RIL (2008)AD_ch06_At.06N/A5.6BNL2471View
2CCRI-36 x Hai-7124, F2 (2007)AD_ch17_Dt.03N/A75.1BNL2471View
3Guazuncho-2 x VH8-4602, consensus (2009)AD_ch17_Dt.03N/A30.49BNL2471View
4Guazuncho-2 x VH8-4602, RIL (2009)AD_ch17_Dt.03N/A32.88BNL2471View
5Handan-208 x Pima-90, F2:3 (2007)AD_ch17_Dt.03N/A103.1BNL2471View
6Palmeri x K-101, F2 (2007)AD_ch18_Dt.13N/A80.9BNL2471View
7AD-genome wide Reference Map (2009)AD_ch17_Dt.03N/A113BNL2471View
8AD-genome wide Reference Map (2009)AD_ch18_Dt.13N/A80BNL2471View
9Xinluzao-1 x Hai-7124, F2 (2008)AD_chUN/A12BNL2471View
10Emian-22 x 3-79, BC1 (2011)AD_ch17_Dt.03N/A82.04BNL2471View
11Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch17_Dt.03N/A44.3BNL2471aView
12TM-1 x Hai-7124, BC1 (2007)AD_ch17_Dt.03N/A65.4BNL2471-200View
13TM-1 x Hai-7124, BC1 (2008)AD_ch17_Dt.03N/A23BNL2471-200View
14Vsg x (TM-1 x Hai-7124), DH (2005)AD_ch17_Dt.03N/A33.9BNL2471-200View
15TM-1 x Hai-7124, BC1 (2012)AD_ch17_Dt.03N/A73.1BNL2471-200View
Sequence
>BNL2471 ID=BNL2471; Name=BNL2471; organism=Gossypium hirsutum; type=genetic_marker; length=199bp
GGGTTCATCGTGGAAGAGAAGAAGAACAAAGAAGAAGAGAGAGAGAGAGA
GAGAGAGAGGTAGAGAAAAAAAAAATGTTGAAAAAGGAGAAGAAAAAAAA
AGATCTAATTTTTATTACAATATAAAATTCTATTTTTATGAAAAAAATAC
TATTTACATATTATAATATTTTGACTTAAAATTTTGTGTAAATCCCGGC