BNL1707, BNL1707 (genetic_marker) Gossypium hirsutum

Marker Overview


Name	BNL1707
Genbank ID	N/A
Type	SSR
Species	Gossypium hirsutum
Germplasm	Deltapine 90
Source Sequence	BNL1707_orig
Source Type	genomic
Repeat Motif	(AG)16
PCR Condition	Annealing temperature: 55
Primer 1	BNL1707_F: TCCTAGGCTGAGTGAGGGCT
Primer 2	BNL1707_R: AATGACGTCGTTTTATGCCC
Polymorphism	P_ BNL1707
Comment	Primer data obtained in 2000

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
A09	chromosome	A09:6156102..6156257 +
CM018210.1	chromosome	CM018210.1:5655752..5655897 +
Chr09_CRI-A2_v1.0.a1	chromosome	Chr09_CRI-A2_v1.0.a1:6250513..6250678 +
At_chr6	chromosome	At_chr6:9492995..9493150 +
A09	chromosome	A09:5916463..5916618 +
Ghir_A09	chromosome	Ghir_A09:6007253..6007408 +
A09	chromosome	A09:5803046..5803201 +
A09	chromosome	A09:6058042..6058197 +
A09	chromosome	A09:6189555..6189710 +
At09	chromosome	At09:6210901..6211046 +
scaffold8077	supercontig	scaffold8077:101541..101686 +
scaffold12202	supercontig	scaffold12202:44400..44549 +
Gbar_A09	chromosome	Gbar_A09:5761044..5761189 +
A09	chromosome	A09:5813583..5813728 +
CM017618.1	chromosome	CM017618.1:5810324..5810483 +
CM017696.1	chromosome	CM017696.1:5948026..5948181 +
A09	chromosome	A09:6200406..6200561 +
Chr09	chromosome	Chr09:5620485..5620636 +
Chr09	chromosome	Chr09:6658502..6658667 +

Germplasm


Stock Name	Type
Deltapine 90	accession

Relationships

The following sequence_feature feature(s) derives from this genetic_marker:


Feature Name	Unique Name	Species	Type
BNL1707_orig	BNL1707_orig	Gossypium hirsutum	sequence_feature

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	7235 x TM-1, RIL (2007)	AD_ch23_Dt.09	N/A	0	BNL1707a	View
2	Guazuncho-2 x VH8-4602, BC1 (2005)	AD_ch12_At.12	N/A	91	BNL1707a	View
3	Guazuncho-2 x VH8-4602, BC2 (2005)	AD_ch09_At.09	N/A	24.3	BNL1707a	View
4	SG 747 x Giza 75, BIL (2013)	AD_ch13_At.13	N/A	108.7	BNL1707a	View
5	Monsanto SSR Bin Map, (2009)	AD_ch09_At.09	N/A	141	BNL1707a	View
6	7235 x TM-1, RIL (2007)	AD_chU	N/A	99.9	BNL1707b	View
7	Guazuncho-2 x VH8-4602, BC2 (2005)	AD_ch12_At.12	N/A	73	BNL1707b	View
8	Guazuncho-2 x VH8-4602, BC1 (2005)	AD_ch13_At.13	N/A	215	BNL1707b	View
9	SG 747 x Giza 75, BIL (2013)	AD_ch12_At.12	N/A	39.3	BNL1707b	View
10	Monsanto SSR Bin Map, (2009)	AD_ch12_At.12	N/A	41	BNL1707b	View
11	Guazuncho-2 x VH8-4602, consensus (2009)	AD_ch12_At.12	N/A	79.27	BNL1707	View
12	Guazuncho-2 x VH8-4602, consensus (2009)	AD_ch13_At.13	N/A	134.76	BNL1707	View
13	Guazuncho-2 x VH8-4602, consensus (2009)	AD_ch09_At.09	N/A	0	BNL1707	View
14	Guazuncho-2 x VH8-4602, RIL (2009)	AD_ch13_At.13	N/A	62.23	BNL1707	View
15	Guazuncho-2 x VH8-4602, RIL (2009)	AD_ch12_At.12	N/A	39.38	BNL1707	View
16	Handan-208 x Pima-90, F2:3 (2007)	AD_ch12_At.12	N/A	38.8	BNL1707	View
17	AD-genome wide Reference Map (2009)	AD_ch23_Dt.09	N/A	36	BNL1707	View
18	AD-genome wide Reference Map (2009)	AD_ch09_At.09	N/A	13	BNL1707	View
19	Xinluzao-1 x Hai-7124, F2 (2008)	AD_chU	N/A	24.9	BNL1707	View
20	CCRI-36 x Hai-7124, F2 (2007)	AD_ch12_At.12	N/A	132	BNL1707	View
21	AD-genome wide Reference Map (2009)	AD_ch12_At.12	N/A	123	BNL1707	View
22	AD-genome wide Reference Map (2009)	AD_ch13_At.13	N/A	210	BNL1707	View
23	Yumian-1 x T586, RIL (2006)	AD_ch09_At.09	N/A	41	BNL1707	View
24	Yumian-1 x 7235, RIL (2015)	AD_ch09_At.09	N/A	28	BNL1707	View
25	TM-1 x (TX-0256 + TX-1046), CSIL (2016)	AD_ch01_At.01	N/A	82.5	BNL1707	View
26	CCRI 12-4 x (AD)5-7, F2 (2015)	AD_ch13_At.13	N/A	148.2	BNL1707	View
27	CCRI-35 x Yumian-1, RIL (2015)	AD_ch09_At.09	N/A	22.8	BNL1707	View
28	Guazuncho-2 x VH8-4602, BC1 (2005)	AD_ch09_At.09	N/A	0	BNL1707d	View
29	HS-46 x MARCABUCAG8US-1-88, RIL (2009)	AD_ch09_At.09	N/A	0	BNL1707-153	View
30	TM-1 x Hai-7124, BC1 (2007)	AD_ch12_At.12	N/A	40	BNL1707-160	View
31	TM-1 x Hai-7124, BC1 (2008)	AD_ch12_At.12	N/A	78.37	BNL1707-160	View
32	TM-1 x Hai-7124, BC1 (2012)	AD_ch12_At.12	N/A	78.5	BNL1707-160	View
33	TM-1 x Hai-7124, BC1 (2007)	AD_ch13_At.13	N/A	133.7	BNL1707-170	View
34	TM-1 x Hai-7124, BC1 (2008)	AD_ch13_At.13	N/A	133.29	BNL1707-170	View
35	TM-1 x Hai-7124, BC1 (2012)	AD_ch13_At.13	N/A	3.5	BNL1707-170	View
36	Vsg x (TM-1 x Hai-7124), DH (2005)	AD_ch09_At.09	N/A	0	BNL1707-150	View
37	TM-1 x Hai-7124, BC1 (2008)	AD_ch13_At.13	N/A	138.14	BNL1707-150	View
38	TM-1 x Hai-7124, BC1 (2012)	AD_ch13_At.13	N/A	0	BNL1707-150	View
39	Yumian-1 x T586, RIL (2009)	AD_ch23_Dt.09	N/A	41	BNL1707/170y(C13)	View
40	Yumian-1 x T586, F2:3 (2005.v0)	AD_ch09_At.09	N/A	0	BNL1707(C9,C12)	View
41	Yumian-1 x T586, F2:3 (2005.v0)	AD_ch23_Dt.09	N/A	0	BNL1707(C9,C12)	View
42	CCRI-35 x Yumian-1, RIL (2017)	AD_ch23_Dt.09	N/A	33.41	BNL1707	View
43	PD 94042 x (AD)4-08, F2 (2016)	AD_ch15_Dt.01	N/A	8.9	BNL1707b	View

Sequence

>BNL1707 ID=BNL1707; Name=BNL1707; organism=Gossypium hirsutum; type=genetic_marker; length=166bp
TCCTAGGCTGAGTGAGGGCTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GCTTTTTTGAAGAAAAAGAAAGAAAAAATGAATTTTTTACAAAATTTTTT
GNTTTTATAACAATATGAAACAATGCCATTTTGNATTAAAGACCCAGGGC
ATAAAACGACGTCATT

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BNL1707, BNL1707 (genetic_marker) Gossypium hirsutum