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Marker Overview
Name | BNL1693 |
Genbank ID | N/A |
Type | SSR |
Species | Gossypium hirsutum |
Germplasm | Deltapine 90 |
Source Sequence | BNL1693_orig
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Source Type | genomic |
Repeat Motif | (CT)12+(CA)9 |
PCR Condition | Annealing temperature: 55 |
Primer 1 | BNL1693_F: CCCTTGGGAATAGCAGGTG |
Primer 2 | BNL1693_R: CATGTGTCTCCGTGTGTGTGTG |
Polymorphism | P_ BNL1693 |
Comment | Primer data obtained in 2000 |
Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Map Positions
# | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
1 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch01_At.01 | N/A | 45.2 | BNL1693b | View |
2 | TM-1 x (TX-0256 + TX-1046), CSIL (2016) | AD_ch15_Dt.01 | N/A | 90 | BNL1693b | View |
3 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch15_Dt.01 | N/A | 22.9 | BNL1693a | View |
4 | TM-1 x (TX-0256 + TX-1046), CSIL (2016) | AD_ch01_At.01 | N/A | 12.5 | BNL1693a | View |
5 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch01_At.01 | N/A | 14.17 | BNL1693 | View |
6 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch15_Dt.01 | N/A | 21.6 | BNL1693 | View |
7 | Guazuncho-2 x VH8-4602, RIL (2009) | AD_ch01_At.01 | N/A | 21.91 | BNL1693 | View |
8 | Guazuncho-2 x VH8-4602, RIL (2009) | AD_ch15_Dt.01 | N/A | 12.3 | BNL1693 | View |
9 | AD-genome wide Reference Map (2009) | AD_ch01_At.01 | N/A | 124 | BNL1693 | View |
10 | TM-1 x 3-79, RIL (2012) | AD_ch01_At.01 | N/A | 101.15 | BNL1693 | View |
11 | AD-genome wide Reference Map (2009) | AD_ch15_Dt.01 | N/A | 31 | BNL1693 | View |
12 | AD-genome wide Reference Map (2009) | AD_ch21_Dt.11 | N/A | 247 | BNL1693 | View |
13 | Yumian-1 x 7235, RIL (2015) | AD_ch15_Dt.01 | N/A | 107.2 | BNL1693 | View |
14 | TM-1 x 3-79, RIL (2014) | AD_ch01_At.01 | N/A | 43.2 | BNL1693 | View |
15 | SG 747 x Giza 75, BIL (2013) | AD_ch15_Dt.01 | N/A | 129 | BNL1693 | View |
16 | CCRI-35 x Yumian-1, RIL (2015) | AD_ch01_At.01 | N/A | 75.7 | BNL1693 | View |
17 | Monsanto SSR Bin Map, (2009) | AD_ch01_At.01 | N/A | 41 | BNL1693 | View |
18 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch01_At.01 | N/A | 17.8 | BNL1693b* | View |
19 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch15_Dt.01 | N/A | 139.9 | BNL1693* | View |
20 | Vsg x (TM-1 x Hai-7124), DH (2005) | AD_ch21_Dt.11 | N/A | 244.9 | BNL1693-480 | View |
21 | TM-1 x (TX-0256 + TX-1046), CSIL (2016) | AD_ch26_Dt.12 | N/A | 0 | BNL1693c | View |
22 | CCRI-35 x Yumian-1, RIL (2017) | AD_ch01_At.01 | N/A | 72 | BNL1693 | View |
23 | TM-1 x 3-79, RIL (2012.v3) | AD_ch01_At.01 | N/A | 43.23 | BNL1693 | View |
Sequence
>BNL1693 ID=BNL1693; Name=BNL1693; organism=Gossypium hirsutum; type=genetic_marker; length=231bp CCCTTGGGAATAGCAGGTGATTATTGATTATGATGATGATTATTATTATT TGTTTATATTACTGTACTAATTTTCAAAGGGTTCTTAAGAAAGAAAACAA ACAAACAAACCAAATGAAACAAAAGATCATGCAAGAAAGCTGCTCAACTG ACAGGCAGGTTACAGCTAGCAAAGTCCCTCTCTCTCTCTCTCTCTCTCTC TCACACACACACACACACACGGAGACACATG
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