BNL1667, BNL1667 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL1667
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL1667_orig
Source Typegenomic
Repeat Motif(AG)19
PCR ConditionAnnealing temperature: 55
Primer 1BNL1667_F: AGGTGCTTCAGGCATGATTC
Primer 2BNL1667_R: CCCTCACACCTAAACCCAAA
PolymorphismP_ BNL1667
CommentPrimer data obtained in 2000
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D01chromosomeD01:8054682..8054882 -
A01chromosomeA01:10576490..10576650 -
CM018215.1chromosomeCM018215.1:8234059..8234231 -
CM018202.1chromosomeCM018202.1:9732204..9732410 -
D5_01chromosomeD5_01:7848642..7848813 -
KI_01chromosomeKI_01:5861814..5861986 -
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:11115481..11115644 -
D10_01chromosomeD10_01:52461215..52461373 +
CM016614.1chromosomeCM016614.1:13108097..13108256 -
At_chr3chromosomeAt_chr3:49163264..49163536 +
At_chr2chromosomeAt_chr2:10076234..10076396 -
D01chromosomeD01:7427154..7427686 -
A01chromosomeA01:9407514..9407676 -
Ghir_A01chromosomeGhir_A01:9838445..9838607 -
D01chromosomeD01:8530519..8530719 -
A01chromosomeA01:9384958..9385120 -
D01chromosomeD01:8220043..8220245 -
A01chromosomeA01:9978987..9979149 -
D01chromosomeD01:8627976..8628176 -
A01chromosomeA01:9807114..9807276 -
Dt01chromosomeDt01:7017185..7017357 -
scaffold2656supercontigscaffold2656:171356..171532 +
scaffold4997supercontigscaffold4997:248704..248876 -
Gbar_D01chromosomeGbar_D01:8965041..8965214 -
Gbar_A01chromosomeGbar_A01:9817092..9817290 -
D01chromosomeD01:8677139..8677311 -
A01chromosomeA01:9436739..9436941 -
CM017623.1chromosomeCM017623.1:8494540..8494714 -
CM017610.1chromosomeCM017610.1:10810602..10810772 -
CM017649.1chromosomeCM017649.1:9294796..9294986 -
CM017636.1chromosomeCM017636.1:10055958..10056103 -
CM017701.1chromosomeCM017701.1:8618236..8618414 -
CM017688.1chromosomeCM017688.1:10010298..10010466 -
D01chromosomeD01:8899485..8899685 -
A01chromosomeA01:9990810..9990972 -
Chr01chromosomeChr01:10010999..10011159 -
Chr01chromosomeChr01:10956006..10956172 -
Chr01chromosomeChr01:7841873..7842043 -
B_01chromosomeB_01:10268060..10268250 -
Chr02chromosomeChr02:8398665..8398825 -
chr02chromosomechr02:7971233..7971395 -
Chr_02chromosomeChr_02:7379144..7379302 -
Chr02chromosomeChr02:8524607..8524787 -
Chr02chromosomeChr02:9260981..9261151 -
Chr02chromosomeChr02:6340291..6340542 -
Chr02chromosomeChr02:8355333..8355494 -
E01chromosomeE01:11933515..11933665 -
F01chromosomeF01:8481098..8481254 -
Chr01chromosomeChr01:184229588..184229742 +
Chr2chromosomeBNL1667:1..344 .
Chr2:42194600..42194950 +
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL1667_origBNL1667_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
13-79 x NM24016, RIL (2008)AD_ch15_Dt.01N/A64.6BNL1667aView
2CCRI-36 x Hai-7124, F2 (2007)AD_ch15_Dt.01N/A122.4BNL1667aView
3Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch15_Dt.01N/A137.6BNL1667aView
4Palmeri x K-101, F2 (2007)AD_ch02_At.02N/A85.9BNL1667aView
5TM-1 x 3-79, RIL (2012)AD_ch01_At.01N/A34.76BNL1667aView
6TM-1 x 3-79, RIL (2014)AD_ch01_At.01N/A109.6BNL1667aView
7Monsanto SSR Bin Map, (2009)AD_ch01_At.01N/A101BNL1667aView
8CCRI-36 x Hai-7124, F2 (2007)AD_ch01_At.01N/A97.4BNL1667bView
9Palmeri x K-101, F2 (2007)AD_ch02_At.02N/A87.7BNL1667bView
10TM-1 x 3-79, RIL (2012)AD_ch15_Dt.01N/A41.51BNL1667bView
11TM-1 x 3-79, RIL (2014)AD_ch15_Dt.01N/A78.4BNL1667bView
12Monsanto SSR Bin Map, (2009)AD_ch15_Dt.01N/A61BNL1667bView
13Guazuncho-2 x VH8-4602, BC2 (2005)AD_ch15_Dt.01N/A88.5BNL1667View
14Guazuncho-2 x VH8-4602, consensus (2009)AD_ch15_Dt.01N/A97.39BNL1667View
15Handan-208 x Pima-90, F2:3 (2007)AD_ch15_Dt.01N/A201BNL1667View
16AD-genome wide Reference Map (2009)AD_ch01_At.01N/A141BNL1667View
17AD-genome wide Reference Map (2009)AD_ch14_Dt.02N/A74BNL1667View
18Xinluzao-1 x Hai-7124, F2 (2008)AD_ch01_At.01N/A60.5BNL1667View
19Emian-22 x 3-79, BC1 (2011)AD_ch15_Dt.01N/A69.37BNL1667View
20AD-genome wide Reference Map (2009)AD_ch15_Dt.01N/A161BNL1667View
21AD-genome wide Reference Map (2009)AD_ch02_At.02N/A99BNL1667View
22TM-1 x 3-79, RIL (2006)AD_ch15_Dt.01N/A44.2BNL1667View
23CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch01_At.01N/A109.6BNL1667View
24CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch15_Dt.01N/A120.1BNL1667View
25SG 747 x Giza 75, BIL (2013)AD_ch15_Dt.01N/A39.5BNL1667View
26Palmeri x K-101, F2 (2007)AD_ch14_Dt.02N/A73.4BNL1667cView
27TM-1 x Hai-7124, BC1 (2007)AD_ch15_Dt.01N/A50.4BNL1667-175View
28TM-1 x Hai-7124, BC1 (2008)AD_ch15_Dt.01N/A48.86BNL1667-175View
29TM-1 x Hai-7124, BC1 (2012)AD_ch15_Dt.01N/A76.3BNL1667-175View
30Vsg x (TM-1 x Hai-7124), DH (2005)AD_ch01_At.01N/A42.6BNL1667-160View
31TM-1 x 3-79, RIL (2012.v3)AD_ch01_At.01N/A109.61BNL1667aView
32TM-1 x 3-79, RIL (2012.v3)AD_ch15_Dt.01N/A78.39BNL1667bView
33PD 94042 x (AD)4-08, F2 (2016)AD_ch15_Dt.01N/A14BNL1667aView
34PD 94042 x (AD)4-08, F2 (2016)AD_ch15_Dt.01N/A118.4BNL1667bView
Sequence
>BNL1667 ID=BNL1667; Name=BNL1667; organism=Gossypium hirsutum; type=genetic_marker; length=163bp
AGGTGCTTCAGGCATGATTCTGATATTTGTTGTTTAAGAAAGGCCTTTTT
CTTAAGAGCCAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGGAGGGTGTTTGATAGATGAAATGGATGTCTATTATTTTGGTTTGGGT
TTAGGTGTGAGGG