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Marker Overview
Name | BNL1667 |
Genbank ID | N/A |
Type | SSR |
Species | Gossypium hirsutum |
Germplasm | Deltapine 90 |
Source Sequence | BNL1667_orig
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Source Type | genomic |
Repeat Motif | (AG)19 |
PCR Condition | Annealing temperature: 55 |
Primer 1 | BNL1667_F: AGGTGCTTCAGGCATGATTC |
Primer 2 | BNL1667_R: CCCTCACACCTAAACCCAAA |
Polymorphism | P_ BNL1667 |
Comment | Primer data obtained in 2000 |
Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Map Positions
# | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
1 | 3-79 x NM24016, RIL (2008) | AD_ch15_Dt.01 | N/A | 64.6 | BNL1667a | View |
2 | CCRI-36 x Hai-7124, F2 (2007) | AD_ch15_Dt.01 | N/A | 122.4 | BNL1667a | View |
3 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch15_Dt.01 | N/A | 137.6 | BNL1667a | View |
4 | Palmeri x K-101, F2 (2007) | AD_ch02_At.02 | N/A | 85.9 | BNL1667a | View |
5 | TM-1 x 3-79, RIL (2012) | AD_ch01_At.01 | N/A | 34.76 | BNL1667a | View |
6 | TM-1 x 3-79, RIL (2014) | AD_ch01_At.01 | N/A | 109.6 | BNL1667a | View |
7 | Monsanto SSR Bin Map, (2009) | AD_ch01_At.01 | N/A | 101 | BNL1667a | View |
8 | CCRI-36 x Hai-7124, F2 (2007) | AD_ch01_At.01 | N/A | 97.4 | BNL1667b | View |
9 | Palmeri x K-101, F2 (2007) | AD_ch02_At.02 | N/A | 87.7 | BNL1667b | View |
10 | TM-1 x 3-79, RIL (2012) | AD_ch15_Dt.01 | N/A | 41.51 | BNL1667b | View |
11 | TM-1 x 3-79, RIL (2014) | AD_ch15_Dt.01 | N/A | 78.4 | BNL1667b | View |
12 | Monsanto SSR Bin Map, (2009) | AD_ch15_Dt.01 | N/A | 61 | BNL1667b | View |
13 | Guazuncho-2 x VH8-4602, BC2 (2005) | AD_ch15_Dt.01 | N/A | 88.5 | BNL1667 | View |
14 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch15_Dt.01 | N/A | 97.39 | BNL1667 | View |
15 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch15_Dt.01 | N/A | 201 | BNL1667 | View |
16 | AD-genome wide Reference Map (2009) | AD_ch01_At.01 | N/A | 141 | BNL1667 | View |
17 | AD-genome wide Reference Map (2009) | AD_ch14_Dt.02 | N/A | 74 | BNL1667 | View |
18 | Xinluzao-1 x Hai-7124, F2 (2008) | AD_ch01_At.01 | N/A | 60.5 | BNL1667 | View |
19 | Emian-22 x 3-79, BC1 (2011) | AD_ch15_Dt.01 | N/A | 69.37 | BNL1667 | View |
20 | AD-genome wide Reference Map (2009) | AD_ch15_Dt.01 | N/A | 161 | BNL1667 | View |
21 | AD-genome wide Reference Map (2009) | AD_ch02_At.02 | N/A | 99 | BNL1667 | View |
22 | TM-1 x 3-79, RIL (2006) | AD_ch15_Dt.01 | N/A | 44.2 | BNL1667 | View |
23 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch01_At.01 | N/A | 109.6 | BNL1667 | View |
24 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch15_Dt.01 | N/A | 120.1 | BNL1667 | View |
25 | SG 747 x Giza 75, BIL (2013) | AD_ch15_Dt.01 | N/A | 39.5 | BNL1667 | View |
26 | Palmeri x K-101, F2 (2007) | AD_ch14_Dt.02 | N/A | 73.4 | BNL1667c | View |
27 | TM-1 x Hai-7124, BC1 (2007) | AD_ch15_Dt.01 | N/A | 50.4 | BNL1667-175 | View |
28 | TM-1 x Hai-7124, BC1 (2008) | AD_ch15_Dt.01 | N/A | 48.86 | BNL1667-175 | View |
29 | TM-1 x Hai-7124, BC1 (2012) | AD_ch15_Dt.01 | N/A | 76.3 | BNL1667-175 | View |
30 | Vsg x (TM-1 x Hai-7124), DH (2005) | AD_ch01_At.01 | N/A | 42.6 | BNL1667-160 | View |
31 | TM-1 x 3-79, RIL (2012.v3) | AD_ch01_At.01 | N/A | 109.61 | BNL1667a | View |
32 | TM-1 x 3-79, RIL (2012.v3) | AD_ch15_Dt.01 | N/A | 78.39 | BNL1667b | View |
33 | PD 94042 x (AD)4-08, F2 (2016) | AD_ch15_Dt.01 | N/A | 14 | BNL1667a | View |
34 | PD 94042 x (AD)4-08, F2 (2016) | AD_ch15_Dt.01 | N/A | 118.4 | BNL1667b | View |
Sequence
>BNL1667 ID=BNL1667; Name=BNL1667; organism=Gossypium hirsutum; type=genetic_marker; length=163bp AGGTGCTTCAGGCATGATTCTGATATTTGTTGTTTAAGAAAGGCCTTTTT CTTAAGAGCCAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA GAGGAGGGTGTTTGATAGATGAAATGGATGTCTATTATTTTGGTTTGGGT TTAGGTGTGAGGG
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